Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer - Wikidata - awgldk - TriplyDB

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

http://www.wikidata.org/entity/Q36285430

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Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution Assessment of megabase-scale somatic copy number variation using single-cell sequencing Network insights into the genes regulated by hepatocyte nuclear factor 4 in response to drug induced perturbations: a review Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data.CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data.TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.Inferring copy number and genotype in tumour exome data.Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data.Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data.An Integrated Approach for RNA-seq Data Normalization High-definition reconstruction of clonal composition in cancer Systems biology: personalized medicine for the future?Targeted gene correction minimally impacts whole-genome mutational load in human-disease-specific induced pluripotent stem cell clones.MBASED: allele-specific expression detection in cancer tissues and cell lines.Single cell sequencing reveals low levels of aneuploidy across mammalian tissues.PAM50 breast cancer subtyping by RT-qPCR and concordance with standard clinical molecular markers.The relative timing of mutations in a breast cancer genome.Genomic and transcriptional alterations in lung adenocarcinoma in relation to EGFR and KRAS mutation status.Prognostic relevance of acquired uniparental disomy in serous ovarian cancer.Identification of medium-sized copy number alterations in whole-genome sequencing.TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.Massive interstitial copy-neutral loss-of-heterozygosity as evidence for cancer being a disease of the DNA-damage response.Genomic Complexity Profiling Reveals That HORMAD1 Overexpression Contributes to Homologous Recombination Deficiency in Triple-Negative Breast Cancers.MiR-27a modulates radiosensitivity of triple-negative breast cancer (TNBC) cells by targeting CDC27.Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma.Scalable whole-genome single-cell library preparation without preamplification.Sequencing thousands of single-cell genomes with combinatorial indexing.CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.Segmentum: a tool for copy number analysis of cancer genomes.Reassessing the Evolutionary History of the 17q21 Inversion Polymorphism.Identifying putative breast cancer-associated long intergenic non-coding RNA loci by high density SNP array analysis.Molecular etiology of an indolent lymphoproliferative disorder determined by whole-genome sequencing Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.Novel insights into breast cancer genetic variance through RNA sequencing.Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways.Vasculogenic mimicry in small cell lung cancer.Cancer genomics: why rare is valuable.

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Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

http://www.wikidata.org/entity/Q36285430

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Integrative analysis of genome ...... triple-negative breast cancer

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Integrative analysis of genome ...... triple-negative breast cancer

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Integrative analysis of genome ...... triple-negative breast cancer

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Integrative analysis of genome ...... triple-negative breast cancer

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Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays

A small-cell lung cancer genome with complex signatures of tobacco exposure

A comprehensive catalogue of somatic mutations from a human cancer genome

Somatic mutations affect key pathways in lung adenocarcinoma

Fast and accurate short read alignment with Burrows-Wheeler transform

Allele-specific amplification in cancer revealed by SNP array analysis

Integrated genomic analyses of ovarian carcinoma

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

The Sequence Alignment/Map format and SAMtools

Paxillin and focal adhesion signalling

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