Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer
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Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challengesSciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolutionAssessment of megabase-scale somatic copy number variation using single-cell sequencingNetwork insights into the genes regulated by hepatocyte nuclear factor 4 in response to drug induced perturbations: a reviewComparative analysis of methods for identifying somatic copy number alterations from deep sequencing data.CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data.TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.Inferring copy number and genotype in tumour exome data.Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data.Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data.An Integrated Approach for RNA-seq Data NormalizationHigh-definition reconstruction of clonal composition in cancerSystems biology: personalized medicine for the future?Targeted gene correction minimally impacts whole-genome mutational load in human-disease-specific induced pluripotent stem cell clones.MBASED: allele-specific expression detection in cancer tissues and cell lines.Single cell sequencing reveals low levels of aneuploidy across mammalian tissues.PAM50 breast cancer subtyping by RT-qPCR and concordance with standard clinical molecular markers.The relative timing of mutations in a breast cancer genome.Genomic and transcriptional alterations in lung adenocarcinoma in relation to EGFR and KRAS mutation status.Prognostic relevance of acquired uniparental disomy in serous ovarian cancer.Identification of medium-sized copy number alterations in whole-genome sequencing.TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.Massive interstitial copy-neutral loss-of-heterozygosity as evidence for cancer being a disease of the DNA-damage response.Genomic Complexity Profiling Reveals That HORMAD1 Overexpression Contributes to Homologous Recombination Deficiency in Triple-Negative Breast Cancers.MiR-27a modulates radiosensitivity of triple-negative breast cancer (TNBC) cells by targeting CDC27.Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma.Scalable whole-genome single-cell library preparation without preamplification.Sequencing thousands of single-cell genomes with combinatorial indexing.CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.Segmentum: a tool for copy number analysis of cancer genomes.Reassessing the Evolutionary History of the 17q21 Inversion Polymorphism.Identifying putative breast cancer-associated long intergenic non-coding RNA loci by high density SNP array analysis.Molecular etiology of an indolent lymphoproliferative disorder determined by whole-genome sequencingDynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.Novel insights into breast cancer genetic variance through RNA sequencing.Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencingRobust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substratesGenome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways.Vasculogenic mimicry in small cell lung cancer.Cancer genomics: why rare is valuable.
P2860
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P2860
Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年学术文章
@wuu
2012年学术文章
@zh-cn
2012年学术文章
@zh-hans
2012年学术文章
@zh-my
2012年学术文章
@zh-sg
2012年學術文章
@yue
2012年學術文章
@zh
2012年學術文章
@zh-hant
name
Integrative analysis of genome ...... triple-negative breast cancer
@ast
Integrative analysis of genome ...... triple-negative breast cancer
@en
type
label
Integrative analysis of genome ...... triple-negative breast cancer
@ast
Integrative analysis of genome ...... triple-negative breast cancer
@en
prefLabel
Integrative analysis of genome ...... triple-negative breast cancer
@ast
Integrative analysis of genome ...... triple-negative breast cancer
@en
P2093
P2860
P50
P356
P1433
P1476
Integrative analysis of genome ...... triple-negative breast cancer
@en
P2093
Ali Bashashati
Andrew Roth
Arusha Oloumi
Carlos Caldas
Gulisa Turashvili
Jamie Rosner
Jiarui Ding
Karey Shumansky
Marco A Marra
Martin Hirst
P2860
P304
P356
10.1101/GR.137570.112
P577
2012-05-25T00:00:00Z