CREST maps somatic structural variation in cancer genomes with base-pair resolution. - Wikidata - awgldk - TriplyDB

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

http://www.wikidata.org/entity/Q36480006

about

COPS: a sensitive and accurate tool for detecting somatic Copy Number Alterations using short-read sequence data from paired samples LUMPY: a probabilistic framework for structural variant discovery.The genetic basis of early T-cell precursor acute lymphoblastic leukaemia.Using ERDS to infer copy-number variants in high-coverage genomes DELLY: structural variant discovery by integrated paired-end and split-read analysis Integrated analysis of whole-genome paired-end and mate-pair sequencing data for identifying genomic structural variations in multiple myeloma Genomic profiling of B-progenitor acute lymphoblastic leukemia Legume genomics: understanding biology through DNA and RNA sequencing Structural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectives Recurrent BRAF kinase fusions in melanocytic tumors offer an opportunity for targeted therapy Detection of Genomic Structural Variants from Next-Generation Sequencing Data PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data A genome-wide approach for detecting novel insertion-deletion variants of mid-range size Common Oncogene Mutations and Novel SND1-BRAF Transcript Fusion in Lung Adenocarcinoma from Never Smokers Getting personalized cancer genome analysis into the clinic: the challenges in bioinformatics Evolution of multiple cell clones over a 29-year period of a CLL patient Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan Fitness consequences of polymorphic inversions in the zebra finch genome Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets Bellerophon: a hybrid method for detecting interchromosomal rearrangements at base pair resolution using next-generation sequencing data CONSERTING: integrating copy-number analysis with structural-variation detection.SNP arrays: comparing diagnostic yields for four platforms in children with developmental delay.A survey of copy-number variation detection tools based on high-throughput sequencing data.Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data.SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data.A genomic random interval model for statistical analysis of genomic lesion data SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines.Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches.Population genetic analysis of bi-allelic structural variants from low-coverage sequence data with an expectation-maximization algorithm.BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data Methods for the detection and assembly of novel sequence in high-throughput sequencing data.Identification of copy number variants in whole-genome data using Reference Coverage Profiles.INTEGRATE: gene fusion discovery using whole genome and transcriptome data.SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data.Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data.Sprites: detection of deletions from sequencing data by re-aligning split reads.Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.Discovering and understanding oncogenic gene fusions through data intensive computational approaches

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CREST maps somatic structural variation in cancer genomes with base-pair resolution.

http://www.wikidata.org/entity/Q36480006

description

2011 nî lūn-bûn

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2011年學術文章

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2011年學術文章

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2011年學術文章

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name

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

@ast

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

@en

type

label

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

@ast

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

@en

prefLabel

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

@ast

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

@en

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CREST maps somatic structural variation in cancer genomes with base-pair resolution

@en

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Christopher C Harris

http://www.w3.org/2001/XMLSchema#string

Clayton Naeve

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David Zhao

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Debbie Payne-Turner

http://www.w3.org/2001/XMLSchema#string

Elaine R Mardis

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James R Downing

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Jianmin Wang

http://www.w3.org/2001/XMLSchema#string

Jing Ma

http://www.w3.org/2001/XMLSchema#string

Jinghui Zhang

http://www.w3.org/2001/XMLSchema#string

John C Obenauer

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P2860

Structural variation in the human genome

Mapping and sequencing of structural variation from eight human genomes

Mapping copy number variation by population-scale genome sequencing

A comprehensive catalogue of somatic mutations from a human cancer genome

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

Paired-end mapping reveals extensive structural variation in the human genome

Transcriptome sequencing to detect gene fusions in cancer

Fast and accurate short read alignment with Burrows-Wheeler transform

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

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652-654

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scholarly article

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10.1038/NMETH.1628

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8

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8

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Charles G. Mullighan

Linda Holmfeldt

Susan L. Heatley

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2011-06-12T00:00:00Z

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51212965

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21666668

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3527068

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