VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.
about
Using exposomics to assess cumulative risks and promote healthComprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genomeData use under the NIH GWAS data sharing policy and future directionsNo significant viral transcription detected in whole breast cancer transcriptomesVirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data.Finding the lost treasures in exome sequencing data.Viral expression associated with gastrointestinal adenocarcinomas in TCGA high-throughput sequencing data.SummonChimera infers integrated viral genomes with nucleotide precision from NGS data.Mining for viral fragments in methylation enriched sequencing data.Finding Pathogenic Nucleic Acid Sequences in Next Generation Sequencing Data.Vy-PER: eliminating false positive detection of virus integration events in next generation sequencing data.Human Papillomavirus Drives Tumor Development Throughout the Head and Neck: Improved Prognosis Is Associated With an Immune Response Largely Restricted to the Oropharynx.Next-generation sequencing of translocation renal cell carcinoma reveals novel RNA splicing partners and frequent mutations of chromatin-remodeling genes.Unraveling the web of viroinformatics: computational tools and databases in virus research.Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-SeqVERSE: a novel approach to detect virus integration in host genomes through reference genome customizationAlternative applications for distinct RNA sequencing strategies.Secondary Analysis of the NCI-60 Whole Exome Sequencing Data Indicates Significant Presence of Propionibacterium acnes Genomic Material in Leukemia (RPMI-8226) and Central Nervous System (SF-295, SF-539, and SNB-19) Cell Lines.NGS-based approach to determine the presence of HPV and their sites of integration in human cancer genome.Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates.Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology.A fast and robust protocol for metataxonomic analysis using RNAseq data.BATVI: Fast, sensitive and accurate detection of virus integrations.No association between HPV positive breast cancer and expression of human papilloma viral transcripts.McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data.Divergent viral presentation among human tumors and adjacent normal tissues.Adeno-Associated Virus 2-Mediated Hepatocellular Carcinoma is Very Rare in Korean Patients.Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-SeqThe landscape of viral expression and host gene fusion and adaptation in human cancerChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequencesViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution.Long-term evolution of viruses: A Janus-faced balance.CSN1 Somatic Mutations in Penile Squamous Cell Carcinoma.Tumour virology in the era of high-throughput genomics.Comprehensive Genomic Profiling of Metastatic Squamous Cell Carcinoma of the Anal Canal.Subtypes of HPV-Positive Head and Neck Cancers Are Associated with HPV Characteristics, Copy Number Alterations, PIK3CA Mutation, and Pathway Signatures.Virus-Clip: a fast and memory-efficient viral integration site detection tool at single-base resolution with annotation capability.Analysis of the whole transcriptome from gingivo-buccal squamous cell carcinoma reveals deregulated immune landscape and suggests targets for immunotherapy.STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data.HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers.
P2860
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P2860
VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
2012年论文
@zh
2012年论文
@zh-cn
name
VirusSeq: software to identify ...... encing of human cancer tissue.
@ast
VirusSeq: software to identify ...... encing of human cancer tissue.
@en
type
label
VirusSeq: software to identify ...... encing of human cancer tissue.
@ast
VirusSeq: software to identify ...... encing of human cancer tissue.
@en
prefLabel
VirusSeq: software to identify ...... encing of human cancer tissue.
@ast
VirusSeq: software to identify ...... encing of human cancer tissue.
@en
P2093
P2860
P356
P1433
P1476
VirusSeq: software to identify ...... encing of human cancer tissue.
@en
P2093
Erika J Thompson
John N Weinstein
Nizar M Tannir
Xiaoping Su
Yunxin Chen
P2860
P304
P356
10.1093/BIOINFORMATICS/BTS665
P407
P577
2012-11-17T00:00:00Z