Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix.
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Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process modelFolding very short peptides using molecular dynamicsThe Ramachandran plots of glycine and pre-prolineGibbs sampling and helix-cap motifsRemoval of the Side Chain at the Active-Site Serine by a Glycine Substitution Increases the Stability of a Wide Range of Serine β-Lactamases by Relieving Steric StrainAssessing side-chain perturbations of the protein backbone: a knowledge-based classification of residue Ramachandran space.Structures, basins, and energies: a deconstruction of the Protein Coil Library.Tensile mechanics of alanine-based helical polypeptide: force spectroscopy versus computer simulations.Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics.Conformation dependence of backbone geometry in proteins.Density Estimation for Protein Conformation Angles Using a Bivariate von Mises Distribution and Bayesian Nonparametrics.Fine grained sampling of residue characteristics using molecular dynamics simulation.A DIRICHLET PROCESS MIXTURE OF HIDDEN MARKOV MODELS FOR PROTEIN STRUCTURE PREDICTIONThe alphabet of intrinsic disorder: II. Various roles of glutamic acid in ordered and intrinsically disordered proteins.An exhaustive survey of regular peptide conformations using a new metric for backbone handedness (h)Rapid calculation of protein chemical shifts using bond polarization theory and its application to protein structure refinement.Glycan fragment database: a database of PDB-based glycan 3D structures.A closer look into the α-helix basin.The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins.Conformational analysis of the partially disordered measles virus N(TAIL)-XD complex by SDSL EPR spectroscopy.Protein loop modeling by using fragment assembly and analytical loop closure.Structure Motivator: a tool for exploring small three-dimensional elements in proteins.Redrawing the Ramachandran plot after inclusion of hydrogen-bonding constraints.The intrinsic conformational features of amino acids from a protein coil library and their applications in force field development.Protein unfolding under force: crack propagation in a network.Speed limit of protein folding evidenced in secondary structure dynamicsDesign of cyclic and other templates for potent and selective peptide alpha-MSH analogues.Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics SimulationsInsights into Unfolded Proteins from the Intrinsic ϕ/ψ Propensities of the AAXAA Host-Guest Series.Structure-Activity Relationship Studies of N- and C-Terminally Modified Secretin Analogs for the Human Secretin ReceptorThe flexibility in the proline ring couples to the protein backbone.A novel secondary structure based on fused five-membered rings motifGeneral trends of dihedral conformational transitions in a globular protein.Conformational propensities and residual structures in unfolded peptides and proteins.Sparsely populated residue conformations in protein structures: revisiting "experimental" Ramachandran maps.The alphabet of intrinsic disorder: I. Act like a Pro: On the abundance and roles of proline residues in intrinsically disordered proteins.The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.Grid-based backbone correction to the ff12SB protein force field for implicit-solvent simulationsMolecular Characterization of Legionellosis Drug Target Candidate Enzyme Phosphoglucosamine Mutase from Legionella pneumophila (strain Paris): An In Silico Approach.Raman studies of solution polyglycine conformations.
P2860
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P2860
Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix.
description
2003 nî lūn-bûn
@nan
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
2003年论文
@zh
2003年论文
@zh-cn
name
Revisiting the Ramachandran pl ...... H-bonding in the alpha-helix.
@ast
Revisiting the Ramachandran pl ...... H-bonding in the alpha-helix.
@en
type
label
Revisiting the Ramachandran pl ...... H-bonding in the alpha-helix.
@ast
Revisiting the Ramachandran pl ...... H-bonding in the alpha-helix.
@en
prefLabel
Revisiting the Ramachandran pl ...... H-bonding in the alpha-helix.
@ast
Revisiting the Ramachandran pl ...... H-bonding in the alpha-helix.
@en
P2093
P2860
P356
P1433
P1476
Revisiting the Ramachandran pl ...... H-bonding in the alpha-helix.
@en
P2093
Annick Thomas
Bosco K Ho
Robert Brasseur
P2860
P304
P356
10.1110/PS.03235203
P577
2003-11-01T00:00:00Z