Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.
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A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.A review of ensemble methods for de novo motif discovery in ChIP-Seq data.A Fast Cluster Motif Finding Algorithm for ChIP-Seq Data Sets.PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data SetsChIP-Seq Data Analysis to Define Transcriptional Regulatory Networks.The jigsaw puzzle of sequence phenotype inference: Piecing together Shannon entropy, importance sampling, and Empirical Bayes.Machine learning and genome annotation: a match meant to be?WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data.Elucidating the evolutionary history and expression patterns of nucleoside phosphorylase paralogs (vegetative storage proteins) in Populus and the plant kingdom.Identifying transcriptional cis-regulatory modules in animal genomes.MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures.RefSelect: a reference sequence selection algorithm for planted (l, d) motif search.AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX ExperimentsAn integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.SMCis: An Effective Algorithm for Discovery of Cis-Regulatory Modules.Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs.An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data.Transcription factor motif quality assessment requires systematic comparative analysisAn Entropy-Based Position Projection Algorithm for Motif Discovery.PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments.DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo.A new exhaustive method and strategy for finding motifs in ChIP-enriched regions.Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets.Noncoding Variants Functional Prioritization Methods Based on Predicted Regulatory Factor Binding Sites.The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia.Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences.A novel k-mer set memory (KSM) motif representation improves regulatory variant prediction.DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP.SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.MODSIDE: a motif discovery pipeline and similarity detector
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P2860
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
2012年论文
@zh
2012年论文
@zh-cn
name
Motif discovery and transcript ...... ext-generation sequencing era.
@ast
Motif discovery and transcript ...... ext-generation sequencing era.
@en
type
label
Motif discovery and transcript ...... ext-generation sequencing era.
@ast
Motif discovery and transcript ...... ext-generation sequencing era.
@en
prefLabel
Motif discovery and transcript ...... ext-generation sequencing era.
@ast
Motif discovery and transcript ...... ext-generation sequencing era.
@en
P2860
P356
P1476
Motif discovery and transcript ...... ext-generation sequencing era.
@en
P2093
Giulio Pavesi
P2860
P304
P356
10.1093/BIB/BBS016
P577
2012-04-19T00:00:00Z