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OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

http://www.wikidata.org/entity/Q36749348

about

RNAstructure: software for RNA secondary structure prediction and analysis Induction of body weight loss through RNAi-knockdown of APOBEC1 gene expression in transgenic rabbits Synthetic RNAs for Gene Regulation: Design Principles and Computational Tools RNA secondary structure analysis using RNAstructure Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides.Target gene abundance contributes to the efficiency of siRNA-mediated gene silencing.Evidence for involvement of cytosolic thioredoxin peroxidase in the excessive resistance of Sf9 Lepidopteran insect cells against radiation-induced apoptosis.Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships MysiRNA-designer: a workflow for efficient siRNA design.RNAstructure: Web servers for RNA secondary structure prediction and analysis.Recent advances in RNA interference therapeutics for CNS diseases.Antisense Oligonucleotides Targeting Influenza A Segment 8 Genomic RNA Inhibit Viral Replication.Action and reaction: the biological response to siRNA and its delivery vehicles.Resources for Small Regulatory RNAs.Computational design of artificial RNA molecules for gene regulation.Delivery of siRNA silencing Runx2 using a multifunctional polymer-lipid nanoparticle inhibits osteogenesis in a cell culture model of heterotopic ossification Comparisons between chemical mapping and binding to isoenergetic oligonucleotide microarrays reveal unexpected patterns of binding to the Bacillus subtilis RNase P RNA specificity domain Oligonucleotide therapeutics: chemistry, delivery and clinical progress.Managing the sequence-specificity of antisense oligonucleotides in drug discovery.Gene Silencing by RNAi in Mammalian Cells.Polymers in the Delivery of siRNA for the Treatment of Virus Infections.Long-range architecture in a viral RNA genome Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.Ensemble and single-molecule FRET studies of protein synthesis.A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.Viral infection resistance conferred on mice by siRNA transgenesis.

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P2860

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

http://www.wikidata.org/entity/Q36749348

description

2008 nî lūn-bûn

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

@zh-hk

2008年論文

@zh-mo

2008年論文

@zh-tw

2008年论文

@wuu

2008年论文

@zh

2008年论文

@zh-cn

name

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

@en

type

label

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

@en

prefLabel

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

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Nucleic Acids Research

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OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

@en

P2093

David H Mathews

http://www.w3.org/2001/XMLSchema#string

Zhi John Lu

http://www.w3.org/2001/XMLSchema#string

P2860

Predicting oligonucleotide affinity to nucleic acid targets.

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

siRNA target site secondary structure predictions using local stable substructures

Asymmetry in the assembly of the RNAi enzyme complex

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

Functional siRNAs and miRNAs exhibit strand bias

On finding all suboptimal foldings of an RNA molecule

Rational siRNA design for RNA interference

Improving specificity of DNA hybridization-based methods.

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W104-8

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scholarly article

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10.1093/NAR/GKN250

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Web Server issue

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36

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2008-05-19T00:00:00Z

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5360853

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18490376

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