RNAstructure: Web servers for RNA secondary structure prediction and analysis. - Wikidata - awgldk - TriplyDB

RNAstructure: Web servers for RNA secondary structure prediction and analysis.

RNAstructure: Web servers for RNA secondary structure prediction and analysis.

http://www.wikidata.org/entity/Q36954094

about

High-throughput characterization of protein-RNA interactions Engineering Translation in Mammalian Cell Factories to Increase Protein Yield: The Unexpected Use of Long Non-Coding SINEUP RNAs RNA secondary structure analysis using RNAstructure Structural computational modeling of RNA aptamers Stacking in RNA: NMR of Four Tetramers Benchmark Molecular Dynamics Arid5a regulates naive CD4+ T cell fate through selective stabilization of Stat3 mRNA.Identification and function annotation of long intervening noncoding RNAs.Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data The Fragment HMGA2-sh-3p20 from HMGA2 mRNA 3'UTR Promotes the Growth of Hepatoma Cells by Upregulating HMGA2.Using the RNAstructure Software Package to Predict Conserved RNA Structures Functional analysis of Kaposi's sarcoma-associated herpesvirus vFLIP expression reveals a new mode of IRES-mediated translation.Overlapping local and long-range RNA-RNA interactions modulate dengue virus genome cyclization and replication In silico single strand melting curve: a new approach to identify nucleic acid polymorphisms in Totiviridae Vfold: a web server for RNA structure and folding thermodynamics prediction.Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy.A Method to Predict the 3D Structure of an RNA Scaffold EpCAM Aptamer-siRNA Chimera Targets and Regress Epithelial Cancer An in solution assay for interrogation of affinity and rational minimer design for small molecule-binding aptamers.The Role of Structural Elements of the 5'-Terminal Region of p53 mRNA in Translation under Stress Conditions Assayed by the Antisense Oligonucleotide Approach RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation.Identification and characterization of a minisatellite contained within a novel miniature inverted-repeat transposable element (MITE) of Porphyromonas gingivalis.Failure to Genotype: A Cautionary Note on an Elusive loxP Sequence The RNA recognition motif of NIFK is required for rRNA maturation during cell cycle progression.Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing.JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures.Mapping RNA-RNA interactome and RNA structure in vivo by MARIO.Post-transcriptional modulation of protein phosphatase PPP2CA and tumor suppressor PTEN by endogenous siRNA cleaved from hairpin within PTEN mRNA 3'UTR in human liver cells.Rtools: a web server for various secondary structural analyses on single RNA sequences.SHAPE analysis of the 5' end of the Mason-Pfizer monkey virus (MPMV) genomic RNA reveals structural elements required for genome dimerization.Rational design of aptazyme riboswitches for efficient control of gene expression in mammalian cells.Progress and outlook in structural biology of large viral RNAs.Kinetics of cisplatin binding to short r(GG) containing miRNA mimics - influence of Na(+)versus K(+), temperature and hydrophobicity on reactivity.Physics-based RNA structure prediction.Impact of RNA structure on ZFP36L2 interaction with luteinizing hormone receptor mRNA.The super-n-motifs model: a novel alignment-free approach for representing and comparing RNA secondary structures.Novel modes of RNA editing in mitochondria.A specific single-stranded DNA induces a distinct conformational change in the nucleoid-associated protein HU.Elucidation of the structures of all members of the Avsunviroidae family.SUMO1 modification of KHSRP regulates tumorigenesis by preventing the TL-G-Rich miRNA biogenesis.

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P2860

RNAstructure: Web servers for RNA secondary structure prediction and analysis.

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RNAstructure: Web servers for RNA secondary structure prediction and analysis.

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RNAstructure: Web servers for RNA secondary structure prediction and analysis.

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RNAstructure: Web servers for RNA secondary structure prediction and analysis.

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Nucleic Acids Research

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RNAstructure: Web servers for RNA secondary structure prediction and analysis.

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David H Mathews

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Jessica S Reuter

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Matthew G Seetin

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Stanislav Bellaousov

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P2860

Predicting oligonucleotide affinity to nucleic acid targets.

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

Fast and reliable prediction of noncoding RNAs

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

RNAstructure: software for RNA secondary structure prediction and analysis

TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences

TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots

A statistical sampling algorithm for RNA secondary structure prediction

Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences

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10.1093/NAR/GKT290

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