Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.
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A user's guide to the encyclopedia of DNA elements (ENCODE)Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regionsComparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomesMicro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm levelProteogenomics: concepts, applications and computational strategiesThe Proteomics Identifications database: 2010 updateRegular patterns for proteome-wide distribution of protein abundance across species.Proteogenomic database construction driven from large scale RNA-seq data.Visualization and dissemination of multidimensional proteomics data comparing protein abundance during Caenorhabditis elegans developmentIntegrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development.Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models.Proteomics-based confirmation of protein expression and correction of annotation errors in the Brucella abortus genome.Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures.The discovery of novel protein-coding features in mouse genome based on mass spectrometry data.Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella TyphimuriumProteogenomics to discover the full coding content of genomes: a computational perspective.Methods and strategies for gene structure curation in WormBase.A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.Protein analysis by shotgun/bottom-up proteomicsOrthoList: a compendium of C. elegans genes with human orthologs.A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.Big Data in Caenorhabditis elegans: quo vadis?A note on the false discovery rate of novel peptides in proteogenomics.Inference and validation of protein identifications.A compendium of Caenorhabditis elegans RNA binding proteins predicts extensive regulation at multiple levelsNatural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila.Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic VariationAn automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays.Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry.Proteogenomics and systems biology: quest for the ultimate missing parts.Mass spectrometry at the interface of proteomics and genomics.Proteogenomics.Proteogenomics for understanding oncology: recent advances and future prospects.Methods, Tools and Current Perspectives in Proteogenomics.Comparison of proteomic and metabolomic profiles of mutants of the mitochondrial respiratory chain in Caenorhabditis elegans.Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies.Massively parallel sequencing of the polyadenylated transcriptome of C. elegans.Investigating protein isoforms via proteomics: a feasibility study.
P2860
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P2860
Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
Use of shotgun proteomics for ...... f C. elegans gene annotations.
@en
type
label
Use of shotgun proteomics for ...... f C. elegans gene annotations.
@en
prefLabel
Use of shotgun proteomics for ...... f C. elegans gene annotations.
@en
P2093
P2860
P50
P356
P1433
P1476
Use of shotgun proteomics for ...... f C. elegans gene annotations.
@en
P2093
Barbara E Frewen
Brent Ewing
Colleen Davis
Gary Williams
Gennifer E Merrihew
James H Thomas
Phil Green
P2860
P304
P356
10.1101/GR.077644.108
P577
2008-07-24T00:00:00Z