DARS (Decoys As the Reference State) potentials for protein-protein docking.
about
Sampling and scoring: a marriage made in heavenOn docking, scoring and assessing protein-DNA complexes in a rigid-body frameworkCharacterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organizationThe impact of side-chain packing on protein docking refinementFast de novo discovery of low-energy protein loop conformations.DrugScorePPI knowledge-based potentials used as scoring and objective function in protein-protein docking.Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques.Designing coarse grained-and atom based-potentials for protein-protein dockingDECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking.DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA dockingAchieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19The scoring of poses in protein-protein docking: current capabilities and future directionsEnergy design for protein-protein interactions.Evaluating the role of a trypsin inhibitor from soap nut (Sapindus trifoliatus L. Var. Emarginatus) seeds against larval gut proteases, its purification and characterizationPEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.Rapid Design of Knowledge-Based Scoring Potentials for Enrichment of Near-Native Geometries in Protein-Protein Docking.Application of asymmetric statistical potentials to antibody-protein dockingThe FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins.Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.Encounter complexes and dimensionality reduction in protein-protein association.Computational solvent mapping in structure-based drug design.IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.Rigid-Docking Approaches to Explore Protein-Protein Interaction Space.The ClusPro web server for protein-protein docking.IFACEwat: the interfacial water-implemented re-ranking algorithm to improve the discrimination of near native structures for protein rigid docking.New additions to the ClusPro server motivated by CAPRI.Predicting binding poses and affinities for protein - ligand complexes in the 2015 D3R Grand Challenge using a physical model with a statistical parameter estimation.Assessing the performance of the MM/PBSA and MM/GBSA methods. 6. Capability to predict protein-protein binding free energies and re-rank binding poses generated by protein-protein docking.A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking.NPPD: A Protein-Protein Docking Scoring Function Based on Dyadic Differences in Networks of Hydrophobic and Hydrophilic Amino Acid Residues.PIE-efficient filters and coarse grained potentials for unbound protein-protein docking.Sequence composition and environment effects on residue fluctuations in protein structures.Optimized atomic statistical potentials: assessment of protein interfaces and loops.Rigid Body Energy Minimization on Manifolds for Molecular Docking.Convex-PL: a novel knowledge-based potential for protein-ligand interactions deduced from structural databases using convex optimization.Protein-ligand docking using FFT based sampling: D3R case study.Chikungunya virus nsP1 interacts directly with nsP2 and modulates its ATPase activity.Dockground: A comprehensive data resource for modeling of protein complexes.Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function.Ameliorative effects of curcumin towards cyclosporine-induced genotoxic potential: an in vitro and in silico study.
P2860
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P2860
DARS (Decoys As the Reference State) potentials for protein-protein docking.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
DARS (Decoys As the Reference State) potentials for protein-protein docking.
@en
type
label
DARS (Decoys As the Reference State) potentials for protein-protein docking.
@en
prefLabel
DARS (Decoys As the Reference State) potentials for protein-protein docking.
@en
P2093
P2860
P1433
P1476
DARS (Decoys As the Reference State) potentials for protein-protein docking.
@en
P2093
Gwo-Yu Chuang
Ryan Brenke
Stephen R Comeau
P2860
P304
P356
10.1529/BIOPHYSJ.108.135814
P407
P577
2008-08-01T00:00:00Z