Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
about
Direct detection of alternative open reading frames translation products in human significantly expands the proteomeA human short open reading frame (sORF)-encoded polypeptide that stimulates DNA end joiningUsing Galaxy-P to leverage RNA-Seq for the discovery of novel protein variationsBiochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defectsProteogenomics: concepts, applications and computational strategiesMUC1-ARF-A Novel MUC1 Protein That Resides in the Nucleus and Is Expressed by Alternate Reading Frame Translation of MUC1 mRNA.Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning.Bayesian prediction of RNA translation from ribosome profilingN-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and menN-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thalianaDeep proteomics of the Xenopus laevis egg using an mRNA-derived reference databaseRibosome profiling reveals the what, when, where and how of protein synthesisA critical analysis of codon optimization in human therapeutics.Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integrationImportance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B.Quantitative profiling of peptides from RNAs classified as noncoding.Gene Model Annotations for Drosophila melanogaster: The Rule-BendersRecognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.PeptideMapper: Efficient and Versatile Amino Acid Sequence and Tag Mapping.Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings.Decoding neuroproteomics: integrating the genome, translatome and functional anatomyPositional proteomics reveals differences in N-terminal proteoform stability.Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish.Global cellular response to chemotherapy-induced apoptosis.Proteolytic post-translational modification of proteins: proteomic tools and methodology.Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution.Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis.lincRNAs: genomics, evolution, and mechanisms.Translating DRiPs: MHC class I immunosurveillance of pathogens and tumors.The proteome under translational control.Identification and characterization of sORF-encoded polypeptidesProteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers.Clinical implications of recent advances in proteogenomics.Proteogenomics from a bioinformatics angle: A growing field.RAN translation-What makes it run?Integrating transcriptome and proteome profiling: Strategies and applications.
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Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
description
article científic
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article scientifique
@fr
articolo scientifico
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artigo científico
@pt
bilimsel makale
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scientific article published on 21 February 2013
@en
vedecký článok
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vetenskaplig artikel
@sv
videnskabelig artikel
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vědecký článek
@cs
name
Deep proteome coverage based o ...... translation initiation events
@en
Deep proteome coverage based o ...... translation initiation events.
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type
label
Deep proteome coverage based o ...... translation initiation events
@en
Deep proteome coverage based o ...... translation initiation events.
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prefLabel
Deep proteome coverage based o ...... translation initiation events
@en
Deep proteome coverage based o ...... translation initiation events.
@nl
P2093
P2860
P50
P356
P1476
Deep proteome coverage based o ...... translation initiation events
@en
P2093
Jeroen Crappé
Tineke Notelaers
Wim Van Criekinge
P2860
P304
P356
10.1074/MCP.M113.027540
P577
2013-02-21T00:00:00Z