RNA folding: thermodynamic and molecular descriptions of the roles of ions
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Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesisFluorescence-Based Strategies to Investigate the Structure and Dynamics of Aptamer-Ligand ComplexesUnderstanding nucleic acid-ion interactionsBiomolecular electrostatics and solvation: a computational perspectiveInsights into Metalloregulation by M-box Riboswitch RNAs via Structural Analysis of Manganese-Bound ComplexesRNA folding and catalysis mediated by iron (II)Domain III of the T. thermophilus 23S rRNA folds independently to a near-native stateAn Empirical Polarizable Force Field Based on the Classical Drude Oscillator Model: Development History and Recent ApplicationsMagnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection.Structural and energetic analysis of 2-aminobenzimidazole inhibitors in complex with the hepatitis C virus IRES RNA using molecular dynamics simulations.Mg2+ ions: do they bind to nucleobase nitrogens?Divalent ion competition reveals reorganization of an RNA ion atmosphere upon foldingDissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding.Predicting ion binding properties for RNA tertiary structures.The ligand-free state of the TPP riboswitch: a partially folded RNA structure.Metal ions: supporting actors in the playbook of small ribozymes.Modeling nucleic acids.Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity.Bidentate RNA-magnesium clamps: on the origin of the special role of magnesium in RNA folding.In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus.DNA acting like RNA.Multisite ion model in concentrated solutions of divalent cations (MgCl2 and CaCl2): osmotic pressure calculations.Implications of molecular heterogeneity for the cooperativity of biological macromolecules.Salt contribution to RNA tertiary structure folding stabilityCooperative RNP assembly: complementary rescue of structural defects by protein and RNA subunits of archaeal RNase P.Rapidly optimizing an aptamer based BoNT sensor by feedback system control (FSC) scheme.Molecular Mechanics Investigation of an Adenine-Adenine Non-Canonical Pair Conformational ChangeFree energy landscape and multiple folding pathways of an H-type RNA pseudoknot.Ionic strength-dependent persistence lengths of single-stranded RNA and DNA.Electrostatics of nucleic acid folding under conformational constraintMetal-ion-dependent folding of a uranyl-specific DNAzyme: insight into function from fluorescence resonance energy transfer studies.Multiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy.Thermodynamic origins of monovalent facilitated RNA folding.Isothermal folding of G-quadruplexes.Ion-mediated RNA structural collapse: effect of spatial confinement.Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structureMapping L1 ligase ribozyme conformational switch.The Role of Correlation and Solvation in Ion Interactions with B-DNACation-Anion Interactions within the Nucleic Acid Ion Atmosphere Revealed by Ion Counting.Multiscale methods for computational RNA enzymology.
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RNA folding: thermodynamic and molecular descriptions of the roles of ions
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 03 October 2008
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
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vědecký článek
@cs
name
RNA folding: thermodynamic and molecular descriptions of the roles of ions
@en
RNA folding: thermodynamic and molecular descriptions of the roles of ions.
@nl
type
label
RNA folding: thermodynamic and molecular descriptions of the roles of ions
@en
RNA folding: thermodynamic and molecular descriptions of the roles of ions.
@nl
prefLabel
RNA folding: thermodynamic and molecular descriptions of the roles of ions
@en
RNA folding: thermodynamic and molecular descriptions of the roles of ions.
@nl
P2860
P1433
P1476
RNA folding: thermodynamic and molecular descriptions of the roles of ions
@en
P2093
David E Draper
P2860
P304
P356
10.1529/BIOPHYSJ.108.131813
P407
P577
2008-10-03T00:00:00Z