Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives
about
Emerging Role of Genomic Rearrangements in Breast Cancer: Applying Knowledge from Other CancersBiogenesis, identification, and function of exonic circular RNAsComputational characterisation of cancer molecular profiles derived using next generation sequencingThe "grep" command but not FusionMap, FusionFinder or ChimeraScan captures the CIC-DUX4 fusion gene from whole transcriptome sequencing data on a small round cell tumor with t(4;19)(q35;q13)Comparison between karyotyping-FISH-reverse transcription PCR and RNA-sequencing-fusion gene identification programs in the detection of KAT6A-CREBBP in acute myeloid leukemiaOpen-access synthetic spike-in mRNA-seq data for cancer gene fusions.Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data.Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.Discovering and understanding oncogenic gene fusions through data intensive computational approachesChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data miningChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.A new GTF2I-BRAF fusion mediating MAPK pathway activation in pilocytic astrocytoma.VERSE: a novel approach to detect virus integration in host genomes through reference genome customizationAlternative applications for distinct RNA sequencing strategies.JAFFA: High sensitivity transcriptome-focused fusion gene detection.Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomesRead-through transcripts in normal human lung parenchyma are down-regulated in lung adenocarcinoma.RWCFusion: identifying phenotype-specific cancer driver gene fusions based on fusion pair random walk scoring method.Advances for studying clonal evolution in cancer.Detecting and targetting oncogenic fusion proteins in the genomic era.Statistical algorithms improve accuracy of gene fusion detection.Relevance of Fusion Genes in Pediatric Cancers: Toward Precision Medicine.Present and future of molecular monitoring in chronic myeloid leukaemia.The liquid biopsy in lung cancerCurrent companion diagnostics in advanced colorectal cancer; getting a bigger and better piece of the pieIntegrating RNA sequencing into neuro-oncology practice.Novel fusion genes and chimeric transcripts in ependymal tumors.Identification of KANSARL as the first cancer predisposition fusion gene specific to the population of European ancestry origin.Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma.RNA sequencing of sarcomas with simple karyotypes: identification and enrichment of fusion transcripts.De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significanceChimera: a Bioconductor package for secondary analysis of fusion products.FAM53B truncation caused by t(10;19)(q26;q13) chromosome translocation in acute lymphoblastic leukemia.Domain retention in transcription factor fusion genes and its biological and clinical implications: a pan-cancer study.Reference-free prediction of rearrangement breakpoint reads.Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study.Fusion genes in solid tumors: the possibilities and the pitfalls.Gene Fusion in Malignant Glioma: An Emerging Target for Next-Generation Personalized Treatment.A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing.Systems Toxicology
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Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives
description
article científic
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article scientifique
@fr
articolo scientifico
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artigo científico
@pt
bilimsel makale
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scientific article published on 09 August 2012
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
@cs
name
Application of next generation ...... ols, features and perspectives
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Application of next generation ...... ls, features and perspectives.
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type
label
Application of next generation ...... ols, features and perspectives
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Application of next generation ...... ls, features and perspectives.
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prefLabel
Application of next generation ...... ols, features and perspectives
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Application of next generation ...... ls, features and perspectives.
@nl
P2093
P2860
P356
P1476
Application of next generation ...... ols, features and perspectives
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P2093
Junfeng Xia
Peilin Jia
Qingguo Wang
Zhongming Zhao
P2860
P304
P356
10.1093/BIB/BBS044
P50
P577
2012-08-09T00:00:00Z