Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
about
Tandem RNA chimeras contribute to transcriptome diversity in human population and are associated with intronic genetic variantsHypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random PrimersRecurrent rearrangements in prostate cancer: causes and therapeutic potentialChimeric RNAs in cancer and normal physiology.Recurrent fusion RNA DUS4L-BCAP29 in non-cancer human tissues and cells.Intergenically Spliced Chimeric RNAs in Cancer.Recurrent chimeric fusion RNAs in non-cancer tissues and cells.Discovery of CTCF-sensitive Cis-spliced fusion RNAs between adjacent genes in human prostate cells.Chimeric RNAs generated by intergenic splicing in normal and cancer cells.Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data.A comparative study of techniques for differential expression analysis on RNA-Seq data.Targeted assembly of short sequence reads.Discovering and understanding oncogenic gene fusions through data intensive computational approachesRecurrent read-through fusion transcripts in breast cancer.Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing data.RNA-Seq and human complex diseases: recent accomplishments and future perspectives.Alternative splicing regulated by butyrate in bovine epithelial cells.FusionFinder: a software tool to identify expressed gene fusion candidates from RNA-Seq data.Long-range transcriptome sequencing reveals cancer cell growth regulatory chimeric mRNA.Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples.State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions.Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemiaHuman serum amyloid A3 (SAA3) protein, expressed as a fusion protein with SAA2, binds the oxidized low density lipoprotein receptor.Functional characterization of BC039389-GATM and KLK4-KRSP1 chimeric read-through transcripts which are up-regulated in renal cell cancerNGS catalog: A database of next generation sequencing studies in humans.JAFFA: High sensitivity transcriptome-focused fusion gene detection.A transforming KIF5B and RET gene fusion in lung adenocarcinoma revealed from whole-genome and transcriptome sequencing.Fusion transcript loci share many genomic features with non-fusion loci.PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events.Microseminoprotein-Beta Expression in Different Stages of Prostate Cancer.Dissect: detection and characterization of novel structural alterations in transcribed sequencesCEDER: accurate detection of differentially expressed genes by combining significance of exons using RNA-Seq.NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precisionSLC45A3-ELK4 chimera in prostate cancer: spotlight on cis-splicing.Recurrent R-spondin fusions in colon cancer.Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectivesRecurrent and pathological gene fusions in breast cancer: current advances in genomic discovery and clinical implications.Common fusion transcripts identified in colorectal cancer cell lines by high-throughput RNA sequencing.
P2860
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P2860
Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
description
2011 nî lūn-bûn
@nan
2011 թուականին հրատարակուած գիտական յօդուած
@hyw
2011 թվականին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@ast
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@en
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@en-gb
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@nl
type
label
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@ast
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@en
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@en-gb
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@nl
prefLabel
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@ast
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@en
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@en-gb
Deep RNA sequencing analysis o ...... arcinoma and reference samples
@nl
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Deep RNA sequencing analysis o ...... arcinoma and reference samples
@en
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Deepali Bhatt
Jeremy Stinson
Kenneth Jung
Serban Nacu
Somasekar Seshagiri
Thomas D Wu
Wenlin Yuan
Zhengyan Kan
P2860
P2888
P3181
P356
10.1186/1755-8794-4-11
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P577
2011-01-01T00:00:00Z
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P6179
1029325558