MolAxis: efficient and accurate identification of channels in macromolecules
about
Docking and migration of carbon monoxide in nitrogenase: the case for gated pockets from infrared spectroscopy and molecular dynamicsMAP_CHANNELS: a computation tool to aid in the visualization and characterization of solvent channels in macromolecular crystals.Catalytically distinct states captured in a crystal lattice: the substrate-bound and scavenger states of acylaminoacyl peptidase and their implications for functionalityMOLE 2.0: advanced approach for analysis of biomacromolecular channelsSubstrate tunnels in enzymes: structure-function relationships and computational methodologyCAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structuresEnsemble generation and the influence of protein flexibility on geometric tunnel prediction in cytochrome P450 enzymesComputational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanismsWater Diffusion In And Out Of The β-Barrel Of GFP and The Fast Maturing Fluorescent Protein, TurboGFP.CHEXVIS: a tool for molecular channel extraction and visualizationPoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure.Detecting pore-lining regions in transmembrane protein sequencesMOLEonline 2.0: interactive web-based analysis of biomacromolecular channelsNormal Modes Expose Active Sites in Enzymes.Interactive exploration of ligand transportation through protein tunnels.MolAxis: a server for identification of channels in macromoleculesCharacterizing the membrane-bound state of cytochrome P450 3A4: structure, depth of insertion, and orientation.Gates of enzymes.All the O2 Consumed by Thermus thermophilus Cytochrome ba3 Is Delivered to the Active Site through a Long, Open Hydrophobic Tunnel with Entrances within the Lipid Bilayer.Stable closure of the cytoplasmic half-channel is required for efficient proton transport at physiological membrane potentials in the bacteriorhodopsin catalytic cycle.The quest for a functional substrate access tunnel in FeFe hydrogenase.Diversity in ABC transporters: type I, II and III importers.Exploring cavity dynamics in biomolecular systems.Diffusion accessibility as a method for visualizing macromolecular surface geometry.Allosteric Communication Networks in Proteins Revealed through Pocket Crosstalk AnalysisIncluding ligand-induced protein flexibility into protein tunnel prediction.MDpocket: open-source cavity detection and characterization on molecular dynamics trajectories.The gene road to royalty--differential expression of hydroxylating genes in the mandibular glands of the honeybee.Searching for tunnels of proteins – comparison of approaches and available software tools.Side chain flexibility and the pore dimensions in the GABAA receptor.Fast and accurate determination of the relative binding affinities of small compounds to HIV-1 protease using non-equilibrium work.Identifying continuous pores in protein structures with PROPORES by computational repositioning of gating residues.Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey.An Algorithm for Computing Side Chain Conformational Variations of a Protein Tunnel/Channel
P2860
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P2860
MolAxis: efficient and accurate identification of channels in macromolecules
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
@pt
bilimsel makale
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scientific article published on October 2008
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
MolAxis: efficient and accurate identification of channels in macromolecules
@en
MolAxis: efficient and accurate identification of channels in macromolecules.
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MolAxis: efficient and accurate identification of channels in macromolecules
@en
MolAxis: efficient and accurate identification of channels in macromolecules.
@nl
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MolAxis: efficient and accurate identification of channels in macromolecules
@en
MolAxis: efficient and accurate identification of channels in macromolecules.
@nl
P2093
P2860
P356
P1433
P1476
MolAxis: efficient and accurate identification of channels in macromolecules
@en
P2093
Dan Fishelovitch
Dan Halperin
Haim J Wolfson
P2860
P356
10.1002/PROT.22052
P407
P577
2008-10-01T00:00:00Z