Co-expression tools for plant biology: opportunities for hypothesis generation and caveats.
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Algorithm-driven artifacts in median polish summarization of microarray dataKaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics dataIdentification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondriaElucidating gene function and function evolution through comparison of co-expression networks of plantsLearning from Co-expression Networks: Possibilities and ChallengesCharacterization of CIPK Family in Asian Pear (Pyrus bretschneideri Rehd) and Co-expression Analysis Related to Salt and Osmotic Stress ResponsesCOEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)Re-analysis of RNA-seq transcriptome data reveals new aspects of gene activity in Arabidopsis root hairsSystematic identification of functional plant modules through the integration of complementary data sourcesVTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine).COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.Reverse engineering: a key component of systems biology to unravel global abiotic stress cross-talk.ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.Improving clustering with metabolic pathway data.GENIUS: web server to predict local gene networks and key genes for biological functions.COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.AtCAST3.0 update: a web-based tool for analysis of transcriptome data by searching similarities in gene expression profiles.Construction of citrus gene coexpression networks from microarray data using random matrix theory.Gene coexpression network analysis as a source of functional annotation for rice genesNew BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana.Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis.CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression dataAnalysis of the arabidopsis REM gene family predicts functions during flower development.Identifying gene coexpression networks underlying the dynamic regulation of wood-forming tissues in Populus under diverse environmental conditions.CORNET: a user-friendly tool for data mining and integration.Distinct pathways mediate the sorting of tail-anchored proteins to the plastid outer envelope.Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis.*omeSOM: a software for clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants.Predicting genome-wide redundancy using machine learningCo-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene.New perspectives on glutamine synthetase in grasses.Engineering crassulacean acid metabolism to improve water-use efficiencyProspecting for genes involved in transcriptional regulation of plant defenses, a bioinformatics approach.Salt stress and senescence: identification of cross-talk regulatory components.An integrated genomic and metabolomic framework for cell wall biology in rice.Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets.Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays.Effects of abiotic stress on plants: a systems biology perspective.Human gene correlation analysis (HGCA): a tool for the identification of transcriptionally co-expressed genes.Identification of metagenes and their interactions through large-scale analysis of Arabidopsis gene expression data.
P2860
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P2860
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats.
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 27 August 2009
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
Co-expression tools for plant ...... thesis generation and caveats.
@en
Co-expression tools for plant ...... thesis generation and caveats.
@nl
type
label
Co-expression tools for plant ...... thesis generation and caveats.
@en
Co-expression tools for plant ...... thesis generation and caveats.
@nl
prefLabel
Co-expression tools for plant ...... thesis generation and caveats.
@en
Co-expression tools for plant ...... thesis generation and caveats.
@nl
P2093
P50
P1476
Co-expression tools for plant ...... thesis generation and caveats.
@en
P2093
Marek Mutwil
Mimi Tanimoto
Nicholas J Provart
Takeshi Obayashi
P304
P356
10.1111/J.1365-3040.2009.02040.X
P50
P577
2009-08-27T00:00:00Z