Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA. - Wikidata - awgldk - TriplyDB

Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA.

Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA.

http://www.wikidata.org/entity/Q37701642

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Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics Modular Architecture and Unique Teichoic Acid Recognition Features of Choline-Binding Protein L (CbpL) Contributing to Pneumococcal Pathogenesis Revised RNA Dihedral Parameters for the Amber Force Field Improve RNA Molecular Dynamics.Stacking Free Energies of All DNA and RNA Nucleoside Pairs and Dinucleoside-Monophosphates Computed Using Recently Revised AMBER Parameters and Compared with Experiment.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Physics-based all-atom modeling of RNA energetics and structure.Nuclear Magnetic Resonance Structure of an 8 × 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.Molecular Dynamics Correctly Models the Unusual Major Conformation of the GAGU RNA Internal Loop and with NMR Reveals an Unusual Minor Conformation.Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops.

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Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA.

http://www.wikidata.org/entity/Q37701642

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article científic

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article scientifique

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articolo scientifico

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artigo científico

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bilimsel makale

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scientific article published on 22 January 2014

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vedecký článok

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vetenskaplig artikel

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videnskabelig artikel

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vědecký článek

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Modified Amber Force Field Cor ...... ce for Tandem GA pairs in RNA.

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Modified Amber Force Field Cor ...... ce for Tandem GA pairs in RNA.

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type

label

Modified Amber Force Field Cor ...... ce for Tandem GA pairs in RNA.

@en

Modified Amber Force Field Cor ...... ce for Tandem GA pairs in RNA.

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prefLabel

Modified Amber Force Field Cor ...... ce for Tandem GA pairs in RNA.

@en

Modified Amber Force Field Cor ...... ce for Tandem GA pairs in RNA.

@nl

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Journal of Chemical Theory and Computation

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Modified Amber Force Field Cor ...... ce for Tandem GA pairs in RNA.

@en

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Aleksandar Spasic

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Asaminew H Aytenfisu

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David H Mathews

http://www.w3.org/2001/XMLSchema#string

John Serafini

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Matthew G Seetin

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P2860

Non–coding RNA genes and the modern RNA world

CHARMM: the biomolecular simulation program

High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations

The structural basis of ribosome activity in peptide bond synthesis

NMR Structures of (rGC U GA G GCU) 2 and (rGC G GA U GCU) 2 : Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs † , ‡

Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs Are Replaced by isoG−isoC Pairs †

Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics

Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach

Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic

Scalable molecular dynamics with NAMD

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1292-1301

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scholarly article

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10.1021/CT400861G

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3

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10

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2014-01-22T00:00:00Z

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24803859

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3985902

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