Water and ion binding around RNA and DNA (C,G) oligomers.
about
Similarities and differences in interaction of K+ and Na+ with condensed ordered DNA. A molecular dynamics computer simulation studyComplicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurementsInfluence of the pi-pi interaction on the hydrogen bonding capacity of stacked DNA/RNA bases.Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscodingBiomolecular electrostatics and solvation: a computational perspectiveClose encounters with DNAThe 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor grooveSolvent Structure and Hammerhead Ribozyme CatalysisImpact of Conformational Heterogeneity of OxoG Lesions and Their Pairing Partners on Bypass Fidelity by Y Family PolymerasesBlind tests of RNA nearest-neighbor energy predictionComputational exploration of mobile ion distributions around RNA duplexSequence-specific positions of water molecules at the interface between DNA and minor groove binders.Analyzing ion distributions around DNA.Infrared multiple photon dissociation action spectroscopy and theoretical studies of diethyl phosphate complexes: effects of protonation and sodium cationization on structureCharacterization of DNA with an 8-oxoguanine modification.DNA-dependent divalent cation binding in the nucleosome core particle.Efficient aminoacylation of the tRNA(Ala) acceptor stem: dependence on the 2:71 base pairProperties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNAIon distributions around left- and right-handed DNA and RNA duplexes: a comparative study.Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics.Mutagenic effects induced by the attack of NO2 radical to the guanine-cytosine base pair.Mg2+ in the major groove modulates B-DNA structure and dynamicsThe Amber ff99 Force Field Predicts Relative Free Energy Changes for RNA Helix FormationStructural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognition.Cation-Anion Interactions within the Nucleic Acid Ion Atmosphere Revealed by Ion Counting.A review of the role of the sequence-dependent electrostatic landscape in DNA alkylation patterns.Competitive interaction of monovalent cations with DNA from 3D-RISM.Thermodynamic examination of trinucleotide bulged RNA in the context of HIV-1 TAR RNANanoscale structure and dynamics of DNA.Theoretical studies of RNA catalysis: hybrid QM/MM methods and their comparison with MD and QM.Elbow flexibility of the kt38 RNA kink-turn motif investigated by free-energy molecular dynamics simulations.Binding of the bacteriophage P22 N-peptide to the boxB RNA motif studied by molecular dynamics simulations.Ion counting from explicit-solvent simulations and 3D-RISM.Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.Direct Comparison of Amino Acid and Salt Interactions with Double-Stranded and Single-Stranded DNA from Explicit-Solvent Molecular Dynamics Simulations.SAXS/SANS on Supercharged Proteins Reveals Residue-Specific Modifications of the Hydration ShellDNA and its counterions: a molecular dynamics study.Salt-dependent heat capacity changes for RNA duplex formation.Altered structural fluctuations in duplex RNA versus DNA: a conformational switch involving base pair opening.The B- to A-DNA transition and the reorganization of solvent at the DNA surface.
P2860
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P2860
Water and ion binding around RNA and DNA (C,G) oligomers.
description
2000 nî lūn-bûn
@nan
2000年の論文
@ja
2000年論文
@yue
2000年論文
@zh-hant
2000年論文
@zh-hk
2000年論文
@zh-mo
2000年論文
@zh-tw
2000年论文
@wuu
2000年论文
@zh
2000年论文
@zh-cn
name
Water and ion binding around RNA and DNA (C,G) oligomers.
@en
type
label
Water and ion binding around RNA and DNA (C,G) oligomers.
@en
prefLabel
Water and ion binding around RNA and DNA (C,G) oligomers.
@en
P356
P1476
Water and ion binding around RNA and DNA (C,G) oligomers.
@en
P2093
Auffinger P
P304
P356
10.1006/JMBI.2000.3894
P407
P577
2000-07-01T00:00:00Z