Alpha/gamma transitions in the B-DNA backbone. - Wikidata - awgldk - TriplyDB

Alpha/gamma transitions in the B-DNA backbone.

Alpha/gamma transitions in the B-DNA backbone.

http://www.wikidata.org/entity/Q39696476

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The role of methylation in the intrinsic dynamics of B- and Z-DNA The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structures Close encounters with DNA Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC)Structural basis for sequence-dependent DNA cleavage by nonspecific endonucleases Structure and dynamics of hemimethylated GATC sites: implications for DNA-SeqA recognition NMR structure of an -L-LNA:RNA hybrid: structural implications for RNase H recognition Understanding the sequence-dependence of DNA groove dimensions: implications for DNA interactions The intrinsic mechanics of B-DNA in solution characterized by NMR Molecular dynamics of a kappaB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation DNA structures from phosphate chemical shifts.Intrinsic flexibility of B-DNA: the experimental TRX scale.Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis.Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs Characterizing structural transitions using localized free energy landscape analysis Stretched DNA investigated using molecular-dynamics and quantum-mechanical calculations.A measure of bending in nucleic acids structures applied to A-tract DNA.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps The ABCs of molecular dynamics simulations on B-DNA, circa 2012.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.Structure-based modeling of protein: DNA specificity.On the molecular basis of uracil recognition in DNA: comparative study of T-A versus U-A structure, dynamics and open base pair kinetics.Automatic workflow for the classification of local DNA conformations.Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides.Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics.Structural features of DNA that determine RNA polymerase II core promoter.Towards a molecular dynamics consensus view of B-DNA flexibility Structure and decoy-mediated inhibition of the SOX18/Prox1-DNA interaction Ets-1 p51 and p42 isoforms differentially modulate Stromelysin-1 promoter according to induced DNA bend orientation.Influence of 8-oxoguanosine on the fine structure of DNA studied with biasing-potential replica exchange simulations Constant pH Replica Exchange Molecular Dynamics in Explicit Solvent Using Discrete Protonation States: Implementation, Testing, and Validation.The DNA and RNA sugar-phosphate backbone emerges as the key player. An overview of quantum-chemical, structural biology and simulation studies.Dynamic hydrogen bonding and DNA flexibility in minor groove binders: molecular dynamics simulation of the polyamide f-ImPyIm bound to the Mlu1 (MCB) sequence 5'-ACGCGT-3' in 2:1 motif.Synthesis and structural characterization of 2'-fluoro-α-L-RNA-modified oligonucleotides.Conformational characteristics and correlations in crystal structures of nucleic acid oligonucleotides: evidence for sub-states.Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles.Evaluation of DNA Force Fields in Implicit Solvation.Identification and conformational analysis of putative microRNAs in Maruca vitrata (Lepidoptera: Pyralidae).Twenty-five years of nucleic acid simulations

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P2860

Alpha/gamma transitions in the B-DNA backbone.

http://www.wikidata.org/entity/Q39696476

description

2002 nî lūn-bûn

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2002年の論文

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年學術文章

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2002年學術文章

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2002年學術文章

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name

Alpha/gamma transitions in the B-DNA backbone.

@en

Alpha/gamma transitions in the B-DNA backbone.

@nl

type

label

Alpha/gamma transitions in the B-DNA backbone.

@en

Alpha/gamma transitions in the B-DNA backbone.

@nl

prefLabel

Alpha/gamma transitions in the B-DNA backbone.

@en

Alpha/gamma transitions in the B-DNA backbone.

@nl

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Nucleic Acids Research

P1476

Alpha/gamma transitions in the B-DNA backbone.

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Brigitte Hartmann

http://www.w3.org/2001/XMLSchema#string

Dragana Djuranovic

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Péter Várnai

http://www.w3.org/2001/XMLSchema#string

Richard Lavery

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P2860

The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals

Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G

Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG

HhaI methyltransferase flips its target base out of the DNA helix

Crystal structure of CATGGCCATG and its implications for A-tract bending models

Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis

Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

The crystal structure of the RNA/DNA hybrid r(GAAGAGAAGC). d(GCTTCTCTTC) shows significant differences to that found in solution

BII nucleotides in the B and C forms of natural-sequence polymeric DNA: A new model for the C form of DNA

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

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5398-5406

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10.1093/NAR/GKF680

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24

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30

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12490708

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140057

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