Conformational characteristics and correlations in crystal structures of nucleic acid oligonucleotides: evidence for sub-states.
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The role of methylation in the intrinsic dynamics of B- and Z-DNAStructural basis for sequence-dependent DNA cleavage by nonspecific endonucleasesUnderstanding the sequence-dependence of DNA groove dimensions: implications for DNA interactionsThe intrinsic mechanics of B-DNA in solution characterized by NMRDNA structures from phosphate chemical shifts.Intrinsic flexibility of B-DNA: the experimental TRX scale.Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis.Recognition complex between the HMG domain of LEF-1 and its cognate DNA studied by molecular dynamics simulations with explicit solvation.An FTIR investigation of flanking sequence effects on the structure and flexibility of DNA binding sitesMolecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.Automatic workflow for the classification of local DNA conformations.Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides.Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics.Mg2+ in the major groove modulates B-DNA structure and dynamicsHigh-resolution biophysical analysis of the dynamics of nucleosome formationA pyrazolato-bridged dinuclear platinum(II) complex induces only minor distortions upon DNA-binding.Evaluation of DNA Force Fields in Implicit Solvation.Compatible solute influence on nucleic acids: many questions but few answers.Altered structural fluctuations in duplex RNA versus DNA: a conformational switch involving base pair opening.Chiral differentiation of DNA adducts formed by enantiomeric analogues of antitumor cisplatin is sequence-dependent.Balancing the interactions of ions, water, and DNA in the Drude polarizable force field.Local and global effects of strong DNA bending induced during molecular dynamics simulations.Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.All-atom polarizable force field for DNA based on the classical Drude oscillator modelDNA bending propensity in the presence of base mismatches: implications for DNA repair.Molecular dynamics studies on free and bound targets of the bovine papillomavirus type I e2 protein: the protein binding effect on DNA and the recognition mechanismContribution of the intrinsic mechanical energy of the phosphodiester linkage to the relative stability of the A, BI, and BII forms of duplex DNA.Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field ParametersDifferential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li(+), Na(+), K(+), and Rb(+) via Water-Mediated Hydrogen Bonding.Structure and dynamics of phosphate linkages and sugars in an abasic hexaloop RNA hairpin.Sequence-specific transitions of the torsion angle gamma change the polar-hydrophobic profile of the DNA grooves: implication for indirect protein-DNA recognition.DNA fine structure and dynamics in crystals and in solution: the impact of BI/BII backbone conformations.M.TaqI facilitates the base flipping via an unusual DNA backbone conformation.Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations.DNA minor groove electrostatic potential: influence of sequence-specific transitions of the torsion angle gamma and deoxyribose conformations.An optimized extended DNA kappa B site that enhances plasmid DNA nuclear import and gene expression.DNA conformational flexibility study using phosphate backbone neutralization model.Investigation of transcription factor Ndt80 affinity differences for wild type and mutant DNA: A molecular dynamics study
P2860
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P2860
Conformational characteristics and correlations in crystal structures of nucleic acid oligonucleotides: evidence for sub-states.
description
2003 nî lūn-bûn
@nan
2003年の論文
@ja
2003年学术文章
@wuu
2003年学术文章
@zh-cn
2003年学术文章
@zh-hans
2003年学术文章
@zh-my
2003年学术文章
@zh-sg
2003年學術文章
@yue
2003年學術文章
@zh
2003年學術文章
@zh-hant
name
Conformational characteristics ...... ides: evidence for sub-states.
@en
type
label
Conformational characteristics ...... ides: evidence for sub-states.
@en
prefLabel
Conformational characteristics ...... ides: evidence for sub-states.
@en
P2860
P1476
Conformational characteristics ...... ides: evidence for sub-states.
@en
P2093
Djuranovic D
Hartmann B
P2860
P304
P356
10.1080/07391102.2003.10506894
P577
2003-06-01T00:00:00Z