TagRecon: high-throughput mutation identification through sequence tagging. - Wikidata - awgldk - TriplyDB

TagRecon: high-throughput mutation identification through sequence tagging.

TagRecon: high-throughput mutation identification through sequence tagging.

http://www.wikidata.org/entity/Q39743848

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Proteogenomics: concepts, applications and computational strategies How to submit MS proteomics data to ProteomeXchange via the PRIDE database.Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.Tandem mass spectral libraries of peptides in digests of individual proteins: Human Serum Albumin (HSA).Proteogenomics to discover the full coding content of genomes: a computational perspective.Identifying proteomic LC-MS/MS data sets with Bumbershoot and IDPicker Site-specific mapping and quantification of protein S-sulphenylation in cells.A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.Exhaustive database searching for amino acid mutations in proteomes.Protein analysis by shotgun/bottom-up proteomics A bioinformatics workflow for variant peptide detection in shotgun proteomics Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.Supporting tool suite for production proteomics Computational mass spectrometry-based proteomics.Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones.Fast multi-blind modification search through tandem mass spectrometry A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides Overcoming species boundaries in peptide identification with Bayesian information criterion-driven error-tolerant peptide search (BICEPS).Global, in situ, site-specific analysis of protein S-sulfenylation PeptideMapper: Efficient and Versatile Amino Acid Sequence and Tag Mapping.Shotgun protein sequencing with meta-contig assembly.Proteomic Analysis of Lipid Raft-Like Detergent-Resistant Membranes of Lens Fiber Cells.Chronic caloric restriction preserves mitochondrial function in senescence without increasing mitochondrial biogenesis Refining comparative proteomics by spectral counting to account for shared peptides and multiple search engines QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation.Basophile: accurate fragment charge state prediction improves peptide identification rates.Proteomic analysis of Chinese hamster ovary cells Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks.Fast and accurate database searches with MS-GF+Percolator.Mass spectrometry-based proteomics approaches applied in cataract research.Tools and challenges for diversity-driven proteomics in Brazil.Software eyes for protein post-translational modifications.Coupling enrichment methods with proteomics for understanding and treating disease.Proteogenomics from a bioinformatics angle: A growing field.Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?Proteogenomic studies on cancer drug resistance: towards biomarker discovery and target identification.Database Search Engines: Paradigms, Challenges and Solutions.Informatics of protein and posttranslational modification detection via shotgun proteomics.

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P2860

TagRecon: high-throughput mutation identification through sequence tagging.

http://www.wikidata.org/entity/Q39743848

description

2010 nî lūn-bûn

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2010年の論文

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2010年学术文章

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2010年学术文章

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2010年学术文章

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2010年学术文章

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2010年学术文章

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2010年學術文章

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2010年學術文章

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2010年學術文章

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name

TagRecon: high-throughput mutation identification through sequence tagging.

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TagRecon: high-throughput mutation identification through sequence tagging.

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type

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TagRecon: high-throughput mutation identification through sequence tagging.

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TagRecon: high-throughput mutation identification through sequence tagging.

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TagRecon: high-throughput mutation identification through sequence tagging.

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TagRecon: high-throughput mutation identification through sequence tagging.

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P1433

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TagRecon: high-throughput mutation identification through sequence tagging.

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P2093

Amy-Joan L Ham

http://www.w3.org/2001/XMLSchema#string

Lisa J Zimmerman

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Matthew C Chambers

http://www.w3.org/2001/XMLSchema#string

Robbert J Slebos

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Surendra Dasari

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P2860

The prolyl 3-hydroxylases P3H2 and P3H3 are novel targets for epigenetic silencing in breast cancer

Amino acid substitution matrices from protein blocks

dbSNP: the NCBI database of genetic variation

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

Elevated mutant frequencies and increased C : G-->T : A transitions in Mlh1-/- versus Pms2-/- murine small intestinal epithelial cells

Elevated mutant frequencies and predominance of G:C to A:T transition mutations in Msh6(-/-) small intestinal epithelium

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

TANDEM: matching proteins with tandem mass spectra

Rapid and sensitive sequence comparison with FASTP and FASTA

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4

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20131910

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