A bioinformatics workflow for variant peptide detection in shotgun proteomics
about
Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variationsProteogenomics: concepts, applications and computational strategiesProteogenomic database construction driven from large scale RNA-seq data.customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.Identification of gene fusions from human lung cancer mass spectrometry dataProteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data.A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung AdenocarcinomaOn the privacy risks of sharing clinical proteomics dataSingle-nucleotide variations in cardiac arrhythmias: prospects for genomics and proteomics based biomarker discovery and diagnostics.Detecting protein variants by mass spectrometry: a comprehensive study in cancer cell-lines.Protein identification using customized protein sequence databases derived from RNA-Seq data.An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.dbSAP: single amino-acid polymorphism database for protein variation detection.Quantitative analysis of single amino acid variant peptides associated with pancreatic cancer in serum by an isobaric labeling quantitative method.Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.Overcoming species boundaries in peptide identification with Bayesian information criterion-driven error-tolerant peptide search (BICEPS).PGx: Putting Peptides to BEDProteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic VariationJUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.Mass spectrometric protein maps for biomarker discovery and clinical research.The airway epithelium undergoes metabolic reprogramming in individuals at high risk for lung cancer.Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry.Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differencesProfiling proteoforms: promising follow-up of proteomics for biomarker discovery.Proteogenomics meets cancer immunology: mass spectrometric discovery and analysis of neoantigens.Proteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers.Single Amino Acid Variant Profiles of Subpopulations in the MCF-7 Breast Cancer Cell Line.Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy.Mutant Proteogenomics.Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair.CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation.Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments.Construction and assessment of individualized proteogenomic databases for large-scale analysis of nonsynonymous single nucleotide variants.SpliceProt: a protein sequence repository of predicted human splice variants.Onco-proteogenomics: Multi-omics level data integration for accurate phenotype prediction.Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow.
P2860
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P2860
A bioinformatics workflow for variant peptide detection in shotgun proteomics
description
2011 nî lūn-bûn
@nan
2011 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի մարտին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@ast
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@en
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@nl
type
label
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@ast
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@en
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@nl
prefLabel
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@ast
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@en
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@nl
P2093
P2860
P50
P356
P1476
A bioinformatics workflow for variant peptide detection in shotgun proteomics
@en
P2093
Bing Zhang
Patrick Halvey
Robbert J C Slebos
Ze-Qiang Ma
Zengliu Su
P2860
P304
M110.006536
P356
10.1074/MCP.M110.006536
P577
2011-03-09T00:00:00Z