Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles. - Wikidata - awgldk - TriplyDB

Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles.

Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles.

http://www.wikidata.org/entity/Q40830309

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An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach Spatial patterns of transcriptional activity in the chromosome of Escherichia coli Prokaryotic genome regulation: a revolutionary paradigm FolX and FolM are essential for tetrahydromonapterin synthesis in Escherichia coli and Pseudomonas aeruginosa Network reconstruction based on proteomic data and prior knowledge of protein connectivity using graph theory Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli Detecting and removing inconsistencies between experimental data and signaling network topologies using integer linear programming on interaction graphs.Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference.Large-scale comparative genomic ranking of taxonomically restricted genes (TRGs) in bacterial and archaeal genomes.Novel gene sets improve set-level classification of prokaryotic gene expression data.Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes--a genomic approach.Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.Orthologous transcription factors in bacteria have different functions and regulate different genes.Comparing patterns of natural selection across species using selective signatures Dissecting the logical types of network control in gene expression profiles.Linking Cytoscape and the corynebacterial reference database CoryneRegNet Inferring the role of transcription factors in regulatory networks Regulon organization of Arabidopsis DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli.BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters.Ranges of control in the transcriptional regulation of Escherichia coli.Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli Global expression of prophage genes in Escherichia coli O157:H7 strain EDL933 in response to norfloxacin.The bacterial translation stress response.Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.Transcription factors in Escherichia coli prefer the holo conformation Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis.Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism.Perturbed states of the bacterial chromosome: a thymineless death case study Systematic identification and analysis of frequent gene fusion events in metabolic pathways Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering.Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors REP sequences: Mediators of the environmental stress response?YmdB: a stress-responsive ribonuclease-binding regulator of E. coli RNase III activity Gene promoter scan methodology for identifying and classifying coregulated promoters

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Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles.

http://www.wikidata.org/entity/Q40830309

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2003 nî lūn-bûn

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Regulatory network of Escheric ...... ledge and microarray profiles.

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Regulatory network of Escheric ...... ledge and microarray profiles.

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Regulatory network of Escheric ...... ledge and microarray profiles.

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Regulatory network of Escheric ...... wledge and microarray profiles

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Araceli M Huerta

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David A Rosenblueth

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Fred R Blattner

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Jeremy D Glasner

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José Antonio Loza

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P2860

Genome-wide expression profiling in Escherichia coli K-12

Cluster analysis and display of genome-wide expression patterns

Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales

Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

Knowledge-based analysis of microarray gene expression data by using support vector machines

Identifying regulatory networks by combinatorial analysis of promoter elements

Culture medium for enterobacteria

Hierarchical organization of modularity in metabolic networks

Suppression of FNR-dependent transcription activation at the Escherichia coli nir promoter by Fis, IHF and H-NS: modulation of transcription initiation by a complex nucleo-protein assembly.

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

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10.1101/GR.1387003

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11

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13

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Julio Collado-Vides

Rosa María Gutiérrez-Ríos

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9025888

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14597655

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Escherichia coli

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403762

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