Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
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Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transitionOn the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODEMUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data setsArabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factorUltraconserved elements: analyses of dosage sensitivity, motifs and boundariesN-Myc regulates a widespread euchromatic program in the human genome partially independent of its role as a classical transcription factorNestedMICA: sensitive inference of over-represented motifs in nucleic acid sequenceA catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAsAssessing computational tools for the discovery of transcription factor binding sitesA comparative genomic analysis of targets of Hox protein Ultrabithorax amongst distant insect speciesApicidin F: characterization and genetic manipulation of a new secondary metabolite gene cluster in the rice pathogen Fusarium fujikuroiThe Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transferChIP-seq and in vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulenceMammalian Rap1 controls telomere function and gene expression through binding to telomeric and extratelomeric sitesCENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposonsTranscription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complexGenomic organization and evolutionary conservation of plant D-type cyclinsChIP-seq: advantages and challenges of a maturing technologyEpigenetic methodologies for behavioral scientists.Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sitesIn silico regulatory analysis for exploring human disease progression.MuMoD: a Bayesian approach to detect multiple modes of protein-DNA binding from genome-wide ChIP dataDauer-independent insulin/IGF-1-signalling implicates collagen remodelling in longevity.A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacityExploring relationships and mining data with the UCSC Gene Sorter.PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data SetsGenomic targets of the KRAB and SCAN domain-containing zinc finger protein 263Bounded search for de novo identification of degenerate cis-regulatory elements.Using local gene expression similarities to discover regulatory binding site modules.Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifsWeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequencesAn integrated functional genomics approach identifies the regulatory network directed by brachyury (T) in chordoma.Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites.A survey of genomic properties for the detection of regulatory polymorphisms.rMotifGen: random motif generator for DNA and protein sequences.Discriminative motif discovery in DNA and protein sequences using the DEME algorithmTranscription factor target prediction using multiple short expression time series from Arabidopsis thaliana.The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates.
P2860
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P2860
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
Weeder Web: discovery of trans ...... ences from co-regulated genes.
@en
type
label
Weeder Web: discovery of trans ...... ences from co-regulated genes.
@en
prefLabel
Weeder Web: discovery of trans ...... ences from co-regulated genes.
@en
P2860
P356
P1476
Weeder Web: discovery of trans ...... ences from co-regulated genes.
@en
P2093
Giulio Pavesi
Paolo Mereghetti
P2860
P304
P356
10.1093/NAR/GKH465
P433
Web Server issue
P577
2004-07-01T00:00:00Z