about
GOToolBox: functional analysis of gene datasets based on Gene OntologyLogical Modeling and Dynamical Analysis of Cellular NetworksThe shortest path is not the one you know: application of biological network resources in precision oncology researchSBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and toolsMathematical modelling of cell-fate decision in response to death receptor engagementIntegrative modelling of the influence of MAPK network on cancer cell fate decisionDiscovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical ModelingIntroduction to 'picturing eggs, embryos and cells'.Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks.Metagenome annotation using a distributed grid of undergraduate studentsModeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistanceLogical modelling of regulatory networks with GINsim 2.3.Diversity and plasticity of Th cell types predicted from regulatory network modelling.C/EBPα poises B cells for rapid reprogramming into induced pluripotent stem cells.C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4.A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.Transcriptional and epigenetic signatures of zygotic genome activation during early Drosophila embryogenesisModel checking to assess T-helper cell plasticity.Alternative epigenetic states understood in terms of specific regulatory structures.Dynamical modelling of pattern formation during embryonic development.RSAT 2015: Regulatory Sequence Analysis Tools.Dynamical modeling of syncytial mitotic cycles in Drosophila embryos.Syncytial apoptosis signaling network induced by the HIV-1 envelope glycoprotein complex: an overview.Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental PhenotypesC/EBPα Activates Pre-existing and De Novo Macrophage Enhancers during Induced Pre-B Cell Transdifferentiation and MyelopoiesisDynamical roles of biological regulatory circuits.CoCAS: a ChIP-on-chip analysis suite.Logical modelling of cell cycle control in eukaryotes: a comparative study.Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling.Computational modeling of the main signaling pathways involved in mast cell activation.Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc.Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections.Formal derivation of qualitative dynamical models from biochemical networks.Logical model specification aided by model-checking techniques: application to the mammalian cell cycle regulation.From experimental imaging techniques to virtual embryology.Histone Chaperone SSRP1 is Essential for Wnt Signaling Pathway Activity During Osteoblast Differentiation.Dynamical analysis of the regulatory network defining the dorsal-ventral boundary of the Drosophila wing imaginal disc.
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Denis Thieffry
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Denis Thieffry
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Denis Thieffry
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