State-of-the-art fusion-finder algorithms sensitivity and specificity
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Identifying fusion transcripts using next generation sequencingRNA-Seq methods for transcriptome analysisEmerging Role of Genomic Rearrangements in Breast Cancer: Applying Knowledge from Other CancersEvolutionary Insights into RNA trans-Splicing in VertebratesIntegrated analysis of whole-genome paired-end and mate-pair sequencing data for identifying genomic structural variations in multiple myelomaA survey of best practices for RNA-seq data analysisThe "grep" command but not FusionMap, FusionFinder or ChimeraScan captures the CIC-DUX4 fusion gene from whole transcriptome sequencing data on a small round cell tumor with t(4;19)(q35;q13)Comparison between karyotyping-FISH-reverse transcription PCR and RNA-sequencing-fusion gene identification programs in the detection of KAT6A-CREBBP in acute myeloid leukemiaChimeric RNAs in cancer and normal physiology.Comparative assessment of methods for the fusion transcripts detection from RNA-Seq dataOpen-access synthetic spike-in mRNA-seq data for cancer gene fusions.Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.INTEGRATE: gene fusion discovery using whole genome and transcriptome data.Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.SimFuse: A Novel Fusion Simulator for RNA Sequencing (RNA-Seq) DataDiscovering and understanding oncogenic gene fusions through data intensive computational approachesInFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.Characterization of a genetic mouse model of lung cancer: a promise to identify Non-Small Cell Lung Cancer therapeutic targets and biomarkers.Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?Transcriptome meta-analysis of lung cancer reveals recurrent aberrations in NRG1 and Hippo pathway genes.Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.JAFFA: High sensitivity transcriptome-focused fusion gene detection.KAOS: a new automated computational method for the identification of overexpressed genes.NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precisionRecurrent and pathological gene fusions in breast cancer: current advances in genomic discovery and clinical implications.Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancersEvolving techniques for gene fusion detection in soft tissue tumours.Detecting and targetting oncogenic fusion proteins in the genomic era.The emerging complexity of gene fusions in cancer.Relevance of Fusion Genes in Pediatric Cancers: Toward Precision Medicine.Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypesOn the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs.Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma.RNA sequencing of sarcomas with simple karyotypes: identification and enrichment of fusion transcripts.Chimera: a Bioconductor package for secondary analysis of fusion products.SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelinesINTEGRATE-Vis: a tool for comprehensive gene fusion visualization.Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis.
P2860
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P2860
State-of-the-art fusion-finder algorithms sensitivity and specificity
description
2013 nî lūn-bûn
@nan
2013年の論文
@ja
2013年学术文章
@wuu
2013年学术文章
@zh-cn
2013年学术文章
@zh-hans
2013年学术文章
@zh-my
2013年学术文章
@zh-sg
2013年學術文章
@yue
2013年學術文章
@zh
2013年學術文章
@zh-hant
name
State-of-the-art fusion-finder algorithms sensitivity and specificity
@en
type
label
State-of-the-art fusion-finder algorithms sensitivity and specificity
@en
prefLabel
State-of-the-art fusion-finder algorithms sensitivity and specificity
@en
P2860
P50
P356
P1476
State-of-the-art fusion-finder algorithms sensitivity and specificity
@en
P2093
Fulvio Lazzarato
Susanna Donatelli
P2860
P304
P356
10.1155/2013/340620
P407
P577
2013-02-17T00:00:00Z