Sequence comparison by sequence harmony identifies subtype-specific functional sites. - Wikidata - awgldk - TriplyDB

Sequence comparison by sequence harmony identifies subtype-specific functional sites.

Sequence comparison by sequence harmony identifies subtype-specific functional sites.

http://www.wikidata.org/entity/Q41284509

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Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps Partially-supervised protein subclass discovery with simultaneous annotation of functional residues.Sequence harmony: detecting functional specificity from alignments.Exploring the structure and function paradigm.Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions.Supervised multivariate analysis of sequence groups to identify specificity determining residues.Functional specificity lies within the properties and evolutionary changes of amino acids Coevolution in defining the functional specificity.Ensemble approach to predict specificity determinants: benchmarking and validation Clustering of protein domains for functional and evolutionary studies An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.Determinants, discriminants, conserved residues--a heuristic approach to detection of functional divergence in protein families Bacterial tubulin distinct loop sequences and primitive assembly properties support its origin from a eukaryotic tubulin ancestor.Na+-translocating membrane pyrophosphatases are widespread in the microbial world and evolutionarily precede H+-translocating pyrophosphatases.Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures Basis for substrate recognition and distinction by matrix metalloproteinases Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction HIV-1 replication fitness of HLA-B*57/58:01 CTL escape variants is restored by the accumulation of compensatory mutations in gag Surveying the manifold divergence of an entire protein class for statistical clues to underlying biochemical mechanisms.SPEER-SERVER: a web server for prediction of protein specificity determining sites.High-Resolution Identification of Specificity Determining Positions in the LacI Protein Family Using Ensembles of Sub-Sampled Alignments.Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.Specific Conformational States of Ras GTPase upon Effector Binding Membrane-integral pyrophosphatase subfamily capable of translocating both Na+ and H+.Identification and evolution of fungal mitochondrial tyrosyl-tRNA synthetases with group I intron splicing activity.SDR: a database of predicted specificity-determining residues in proteins HIV-1 envelope glycoprotein signatures that correlate with the development of cross-reactive neutralizing activity.Genetic signatures of HIV-1 envelope-mediated bystander apoptosis.A survey on prediction of specificity-determining sites in proteins.Uncovering missing pieces: duplication and deletion history of arrestins in deuterostomes.Multi-Harmony: detecting functional specificity from sequence alignment.Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S--a novel motif scan algorithm with optional secondary structure constraints.Prediction of amino acid positions specific for functional groups in a protein family based on local sequence similarity.Sequence specificity between interacting and non-interacting homologs identifies interface residues--a homodimer and monomer use case.Characterization and prediction of residues determining protein functional specificity.INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification.Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity.Inferring joint sequence-structural determinants of protein functional specificity.Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes.

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P2860

Sequence comparison by sequence harmony identifies subtype-specific functional sites.

http://www.wikidata.org/entity/Q41284509

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2006 nî lūn-bûn

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2006年學術文章

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Sequence comparison by sequence harmony identifies subtype-specific functional sites.

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Sequence comparison by sequence harmony identifies subtype-specific functional sites.

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Sequence comparison by sequence harmony identifies subtype-specific functional sites.

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Sequence comparison by sequence harmony identifies subtype-specific functional sites.

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Jaap Heringa

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K Anton Feenstra

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Walter Pirovano

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P2860

Structural basis of Smad2 recognition by the Smad anchor for receptor activation

The Rab GTPase family

PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information

Predicting specificity-determining residues in two large eukaryotic transcription factor families

Pfam: clans, web tools and services

Structure of a glycerol-conducting channel and the basis for its selectivity

The TGF beta receptor activation process: an inhibitor- to substrate-binding switch

Two short segments of Smad3 are important for specific interaction of Smad3 with c-Ski and SnoN

Smad transcription factors

Different Smad2 partners bind a common hydrophobic pocket in Smad2 via a defined proline-rich motif.

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10.1093/NAR/GKL901

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34

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