about
Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogeneticPhylogeny of gammaproteobacteriaWidespread endogenization of densoviruses and parvoviruses in animal and human genomesThe crystal structure of Helicobacter pylori HP1029 highlights the functional diversity of the sialic acid-related DUF386 familyMarkov models of amino acid substitution to study proteins with intrinsically disordered regionsPhylogeny of parasitic parabasalia and free-living relatives inferred from conventional markers vs. Rpb1, a single-copy geneProbabilistic models of eukaryotic evolution: time for integrationA branch-heterogeneous model of protein evolution for efficient inference of ancestral sequencesImproving evolutionary models for mitochondrial protein data with site-class specific amino acid exchangeability matricesMitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apesWidespread horizontal gene transfer from circular single-stranded DNA viruses to eukaryotic genomesIntroduction. Statistical and computational challenges in molecular phylogenetics and evolutionPredicting the emergence of H3N2 influenza viruses reveals contrasted modes of evolution of HA and NA antigens.A phylogenetic survey of myotubularin genes of eukaryotes: distribution, protein structure, evolution, and gene expressionThe Crystal Structure of the C-Terminal Domain of the Salmonella enterica PduO Protein: An Old Fold with a New Heme-Binding Mode.Automatic detection of rate change in large data sets with an unsupervised approach: the case of influenza viruses.Ligulate Desmarestia (Desmarestiales, Phaeophyceae) revisited: D. japonica sp. nov. and D. dudresnayi differ from D. ligulata.Bio++: efficient extensible libraries and tools for computational molecular evolution.Who Let the CAT Out of the Bag? Accurately Dealing with Substitutional Heterogeneity in Phylogenomic Analyses.Selecting optimal partitioning schemes for phylogenomic datasetsRibonucleotide reduction - horizontal transfer of a required function spans all three domains.An experimentally determined evolutionary model dramatically improves phylogenetic fit.Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA virusesAddressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisited.Non-negative matrix factorization for learning alignment-specific models of protein evolution.An experimentally informed evolutionary model improves phylogenetic fit to divergent lactamase homologsWidespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes.Discovery of novel dsRNA viral sequences by in silico cloning and implications for viral diversity, host range and evolution.Evidence for a hydrogenosomal-type anaerobic ATP generation pathway in Acanthamoeba castellaniiA comparison of the olfactory gene repertoires of adults and larvae in the noctuid moth Spodoptera littoralisToward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill.Mutational studies on resurrected ancestral proteins reveal conservation of site-specific amino acid preferences throughout evolutionary history.Superiority of a mechanistic codon substitution model even for protein sequences in phylogenetic analysis.Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates.Lateral gene transfer and gene duplication played a key role in the evolution of Mastigamoeba balamuthi hydrogenosomes.GeLL: a generalized likelihood library for phylogenetic models.Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns.Evolutionary and Functional Relationships of the dha Regulon by Genomic Context Analysis.Non-Markovian effects on protein sequence evolution due to site dependent substitution rates
P2860
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P2860
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
Phylogenetic mixture models for proteins.
@en
type
label
Phylogenetic mixture models for proteins.
@en
prefLabel
Phylogenetic mixture models for proteins.
@en
P2093
P2860
P356
P1476
Phylogenetic mixture models for proteins.
@en
P2093
Nicolas Lartillot
Olivier Gascuel
Si Quang Le
P2860
P304
P356
10.1098/RSTB.2008.0180
P407
P577
2008-12-01T00:00:00Z