From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal.
about
RNAstructure: software for RNA secondary structure prediction and analysisTurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknotsNetwork Properties of the Ensemble of RNA StructuresPredicting RNA 3D structure using a coarse-grain helix-centered modelFASTR: A novel data format for concomitant representation of RNA sequence and secondary structure information.RNA STRAND: the RNA secondary structure and statistical analysis database.NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.ProbKnot: fast prediction of RNA secondary structure including pseudoknots.Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment.MINT: software to identify motifs and short-range interactions in trajectories of nucleic acids.WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifsSecondary structures of rRNAs from all three domains of life.A toolbox for developing bioinformatics software.CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking.RAG-3D: a search tool for RNA 3D substructuresDSSR: an integrated software tool for dissecting the spatial structure of RNA.Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift Constraints.STAR3D: a stack-based RNA 3D structural alignment toolRNAstructure: Web servers for RNA secondary structure prediction and analysis.Improved RNA secondary structure prediction by maximizing expected pair accuracyRNA Bricks--a database of RNA 3D motifs and their interactionsAutomated motif extraction and classification in RNA tertiary structuresWebSTAR3D: a web server for RNA 3D structural alignment.Parametric analysis of RNA branching configurations.New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.On the page number of RNA secondary structures with pseudoknots.Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families.De novo discovery of structural motifs in RNA 3D structures through clustering.bpRNA: large-scale automated annotation and analysis of RNA secondary structure.RNApdbee 2.0: multifunctional tool for RNA structure annotation.
P2860
Q24602642-E7638889-09D6-42C4-87CA-09276C01B549Q24614901-DB22E6D0-FF33-41F6-A42D-AD73A5AAE1BCQ28608536-069B9D3A-98C4-4F85-9D7F-55277A285A45Q30650995-437023D6-8991-470D-AAAC-2E592443E807Q30991187-5F29A55D-30C3-4795-9A28-13F7E51506DBQ33359913-EF8CC2B6-4CA2-49B5-847B-50E9CA85E6EEQ33600780-220DC619-369F-46E9-8B9C-65587C507375Q33860768-FA8CE53A-8DCD-4BFB-B1F3-AFBCC453A72AQ34135131-88D2A146-EC41-46CE-8781-FC77E9BF1950Q34221793-C3CBF35E-D829-4CDC-BA2A-02B3C59F100BQ34478538-29FC3C5F-8969-42C1-8D60-45CD66BFF045Q35075517-468DF1C0-9578-4E8F-8E45-ED2F81A47C03Q35088620-D9404904-B292-4286-BAFA-49917DB96366Q35803917-22249985-0E07-4FBF-81E6-A87CB1680A02Q35899062-C3BE88CA-3FC7-47E4-8BFE-B40D0C549A98Q36228030-5A335B93-5553-4D9C-B024-AADE0251CD25Q36337710-2203722F-FD35-4C51-BF12-5CBAE94C609EQ36337874-C71BAA81-8A8A-440C-BD49-636323456EB7Q36676510-2B94DF51-0916-4052-8C31-24005809E3F2Q36954094-98F2F9FA-23B8-4339-BD75-B0950CEE592BQ37344489-A05175D8-B7F2-4CAC-B16C-3D3A24CA7944Q37661868-7CEBD3F3-860A-45B6-8CF8-6E22FDC80EC4Q41490617-AFA9C68A-7C23-4624-8C95-68966C8EECABQ45197898-D96FCA48-D501-4080-A2DF-EDFB92862FD1Q46167873-7AA82B5F-740F-40B4-BAFD-43B4E2DE2015Q46242049-AC782835-EDC8-462B-88BB-ABF7FE29E56CQ51476527-3703F4C6-5C38-4419-A163-73999DE57F9CQ52334551-52A6811C-2BDE-4A8C-9353-71973A330568Q52657915-B8DB13FF-313F-4C2F-8B24-AE99A8028A91Q55488957-9E3E7571-C503-455B-83F0-B4B321C1537CQ55518807-59D82AB3-26BD-4448-8277-A76EC442C814
P2860
From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
From knotted to nested RNA str ...... ethods for pseudoknot removal.
@en
type
label
From knotted to nested RNA str ...... ethods for pseudoknot removal.
@en
prefLabel
From knotted to nested RNA str ...... ethods for pseudoknot removal.
@en
P2860
P356
P1433
P1476
From knotted to nested RNA str ...... ethods for pseudoknot removal.
@en
P2093
Jaap Heringa
Sandra Smit
P2860
P304
P356
10.1261/RNA.881308
P407
P577
2008-01-29T00:00:00Z