Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation. - Wikidata - awgldk - TriplyDB

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation.

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation.

http://www.wikidata.org/entity/Q42236163

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C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex Next-generation analysis of gene expression regulation--comparing the roles of synthesis and degradation Structure and RNA-binding properties of the Not1-Not2-Not5 module of the yeast Ccr4-Not complex Architecture of the RNA polymerase II-Mediator core initiation complex The Modifier of Transcription 1 (Mot1) ATPase and Spt16 Histone Chaperone Co-regulate Transcription through Preinitiation Complex Assembly and Nucleosome Organization.Expression homeostasis during DNA replication.Engineered Covalent Inactivation of TFIIH-Kinase Reveals an Elongation Checkpoint and Results in Widespread mRNA Stabilization The exosome component Rrp6 is required for RNA polymerase II termination at specific targets of the Nrd1-Nab3 pathway RNA Sequencing and Analysis Kinetic analysis demonstrates a requirement for the Rat1 exonuclease in cotranscriptional pre-rRNA cleavage.Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex.Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone Inference of gene regulation functions from dynamic transcriptome data.Use of Bru-Seq and BruChase-Seq for genome-wide assessment of the synthesis and stability of RNA Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions.Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress.Poly(A)-tail profiling reveals an embryonic switch in translational control.Multiplexed gene control reveals rapid mRNA turnover.The embryo as a laboratory: quantifying transcription in Drosophila.Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress.The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription.Determination of in vivo RNA kinetics using RATE-seq.MC EMiNEM maps the interaction landscape of the Mediator Heritable variation of mRNA decay rates in yeast.Yeast 14-3-3 protein functions as a comodulator of transcription by inhibiting coactivator functions.Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels.SnapShot-Seq: a method for extracting genome-wide, in vivo mRNA dynamics from a single total RNA sample Dynamic remodeling of histone modifications in response to osmotic stress in Saccharomyces cerevisiae Systematic analysis of the role of RNA-binding proteins in the regulation of RNA stability.Genome-wide quantification of 5'-phosphorylated mRNA degradation intermediates for analysis of ribosome dynamics Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast Splicing-Mediated Autoregulation Modulates Rpl22p Expression in Saccharomyces cerevisiae.Tracking Distinct RNA Populations Using Efficient and Reversible Covalent Chemistry.Control of mRNA Stability in Fungi by NMD, EJC and CBC Factors Through 3'UTR Introns Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe.The CELF1 RNA-Binding Protein Regulates Decay of Signal Recognition Particle mRNAs and Limits Secretion in Mouse Myoblasts.The link between adjacent codon pairs and mRNA stability.The Rtr1p CTD phosphatase autoregulates its mRNA through a degradation pathway involving the REX exonucleases.Temporal and spatial characterization of nonsense-mediated mRNA decay.RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori.

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Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation.

http://www.wikidata.org/entity/Q42236163

description

2012 nî lūn-bûn

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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2012年论文

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2012年论文

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name

Comparative dynamic transcript ...... RNA synthesis and degradation.

@en

Comparative dynamic transcriptome analysis

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type

label

Comparative dynamic transcript ...... RNA synthesis and degradation.

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Comparative dynamic transcriptome analysis

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prefLabel

Comparative dynamic transcript ...... RNA synthesis and degradation.

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Comparative dynamic transcriptome analysis

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Genome Research

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Comparative dynamic transcript ...... RNA synthesis and degradation.

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Achim Tresch

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Daniel Schulz

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Kerstin C Maier

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Laurent Larivière

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Mai Sun

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Martin Seizl

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Nicole Pirkl

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Patrick Cramer

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Stefanie Etzold

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P2860

Single-RNA counting reveals alternative modes of gene expression in yeast

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

The multifunctional Ccr4-Not complex directly promotes transcription elongation

The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs.

Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways.

Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis.

RNA polymerase II subunits link transcription and mRNA decay to translation.

Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae

The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae.

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1350-1359

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10.1101/GR.130161.111

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7

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22

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2012-03-30T00:00:00Z

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223979107

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22466169

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3396375

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