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MLST revisited: the gene-by-gene approach to bacterial genomics.

MLST revisited: the gene-by-gene approach to bacterial genomics.

http://www.wikidata.org/entity/Q43704503

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Distinct genealogies for plasmids and chromosome Biobanking and translation of human genetics and genomics for infectious diseases Population and Functional Genomics of Neisseria Revealed with Gene-by-Gene Approaches Detection, Characterization, and Typing of Shiga Toxin-Producing Escherichia coli Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees An OMV Vaccine Derived from a Capsular Group B Meningococcus with Constitutive FetA Expression: Preclinical Evaluation of Immunogenicity and Toxicity Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance TypOn: the microbial typing ontology Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections.The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.Glucose Metabolism via the Entner-Doudoroff Pathway in Campylobacter: A Rare Trait that Enhances Survival and Promotes Biofilm Formation in Some Isolates.Cronobacter, the emergent bacterial pathogen Enterobacter sakazakii comes of age; MLST and whole genome sequence analysis.Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access.First step in using molecular data for microbial food safety risk assessment; hazard identification of Escherichia coli O157:H7 by coupling genomic data with in vitro adherence to human epithelial cells.Integration of Genomic and Other Epidemiologic Data to Investigate and Control a Cross-Institutional Outbreak of Streptococcus pyogenes.PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.Exploiting Bacterial Whole-Genome Sequencing Data for Evaluation of Diagnostic Assays: Campylobacter Species Identification as a Case Study A Comparison of Molecular Typing Methods Applied to Enterobacter cloacae complex: hsp60 Sequencing, Rep-PCR, and MLST Insight into Potential Probiotic Markers Predicted in Lactobacillus pentosus MP-10 Genome Sequence Whole genome sequencing reveals within-host genetic changes in paired meningococcal carriage isolates from Ethiopia.Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus.PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates Failure of phylogeny inferred from multilocus sequence typing to represent bacterial phylogeny.Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.Genomic insights into the evolutionary origin of Xanthomonas axonopodis pv. citri and its ecological relatives.Measurably evolving pathogens in the genomic era Phylogenomic and MALDI-TOF MS analysis of Streptococcus sinensis HKU4T reveals a distinct phylogenetic clade in the genus Streptococcus.Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting.Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle.Concordance and discordance of sequence survey methods for molecular epidemiology A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter.Molecular and pathological insights into Chlamydia pecorum-associated sporadic bovine encephalomyelitis (SBE) in Western Australia Using multilocus sequence typing to study bacterial variation: prospects in the genomic era.Recombination blurs phylogenetic groups routine assignment in Escherichia coli: setting the record straight.Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities.The domestication of the probiotic bacterium Lactobacillus acidophilus.A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes SNP typing for germplasm identification of Amomum villosum Lour. Based on DNA barcoding markers.

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MLST revisited: the gene-by-gene approach to bacterial genomics.

http://www.wikidata.org/entity/Q43704503

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2013 nî lūn-bûn

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2013年の論文

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2013年學術文章

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name

MLST revisited: the gene-by-gene approach to bacterial genomics.

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MLST revisited: the gene-by-gene approach to bacterial genomics.

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type

label

MLST revisited: the gene-by-gene approach to bacterial genomics.

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MLST revisited: the gene-by-gene approach to bacterial genomics.

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prefLabel

MLST revisited: the gene-by-gene approach to bacterial genomics.

@en

MLST revisited: the gene-by-gene approach to bacterial genomics.

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Nature Reviews Microbiology

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MLST revisited: the gene-by-gene approach to bacterial genomics

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Melissa J Jansen van Rensburg

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Noel D McCarthy

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Sarah G Earle

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

A simple, fast, and accurate method of phylogenomic inference

REAPR: a universal tool for genome assembly evaluation

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA)

First insights into the evolution of Streptococcus uberis: a multilocus sequence typing scheme that enables investigation of its population biology

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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728-736

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10.1038/NRMICRO3093

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23979428

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