Indirect recognition in sequence-specific DNA binding by Escherichia coli integration host factor: the role of DNA deformation energy.
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Analytical Ultracentrifugation as a Tool to Study Nonspecific Protein-DNA InteractionsCooperative DnaA Binding to the Negatively Supercoiled datA Locus Stimulates DnaA-ATP Hydrolysis.Timely binding of IHF and Fis to DARS2 regulates ATP-DnaA production and replication initiation.Molecular dissection of Mycobacterium tuberculosis integration host factor reveals novel insights into the mode of DNA binding and nucleoid compactionIntegration host factor assembly at the cohesive end site of the bacteriophage lambda genome: implications for viral DNA packaging and bacterial gene regulationNucleosome accessibility governed by the dimer/tetramer interface.Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface.Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets.IHF-binding sites inhibit DNA loop formation and transcription initiation.Physical and Functional Characterization of a Viral Genome Maturation Complex.Indirect read-out of the promoter DNA by RNA polymerase in the closed complex.Formation of a wrapped DNA-protein interface: experimental characterization and analysis of the large contributions of ions and water to the thermodynamics of binding IHF to H' DNA.An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles.Sequence-specific transitions of the torsion angle gamma change the polar-hydrophobic profile of the DNA grooves: implication for indirect protein-DNA recognition.An A-tract at the AtzR binding site assists DNA binding, inducer-dependent repositioning and transcriptional activation of the PatzDEF promoter.
P2860
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P2860
Indirect recognition in sequence-specific DNA binding by Escherichia coli integration host factor: the role of DNA deformation energy.
description
2006 nî lūn-bûn
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2006年の論文
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2006年学术文章
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name
Indirect recognition in sequen ...... ole of DNA deformation energy.
@en
Indirect recognition in sequen ...... ole of DNA deformation energy.
@nl
type
label
Indirect recognition in sequen ...... ole of DNA deformation energy.
@en
Indirect recognition in sequen ...... ole of DNA deformation energy.
@nl
prefLabel
Indirect recognition in sequen ...... ole of DNA deformation energy.
@en
Indirect recognition in sequen ...... ole of DNA deformation energy.
@nl
P2093
P2860
P356
P1476
Indirect recognition in sequen ...... ole of DNA deformation energy.
@en
P2093
Donald F Senear
G Wesley Hatfield
Kimberly A Aeling
Michael L Opel
Nicholas R Steffen
Richard H Lathrop
Vira Tretyachenko-Ladokhina
P2860
P304
39236-39248
P356
10.1074/JBC.M606363200
P407
P577
2006-10-11T00:00:00Z