Predicting protein functional sites with phylogenetic motifs.
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Predicting functional sites with an automated algorithm suitable for heterogeneous datasetsMINER: software for phylogenetic motif identificationOct-2 DNA binding transcription factor: functional consequences of phosphorylation and glycosylationStructure-based Methods for Computational Protein Functional Site PredictionL1pred: a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifierHow accurate and statistically robust are catalytic site predictions based on closeness centrality?A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sitesEXIA2: web server of accurate and rapid protein catalytic residue prediction.Amino acid positions subject to multiple coevolutionary constraints can be robustly identified by their eigenvector network centrality scoresNovel feature for catalytic protein residues reflecting interactions with other residuesIdentification of catalytic residues using a novel feature that integrates the microenvironment and geometrical location properties of residues.Accurate prediction of protein catalytic residues by side chain orientation and residue contact density.Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family.Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins.Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property informationComparing the functional roles of nonconserved sequence positions in homologous transcription repressors: implications for sequence/function analyses.Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression among Populus paralogues.Functionally important positions can comprise the majority of a protein's architecture.Functional evolution of PLP-dependent enzymes based on active-site structural similaritiesMultiple co-evolutionary networks are supported by the common tertiary scaffold of the LacI/GalR proteins.Separation-of-function mutation in HPC2, a member of the HIR complex in S. cerevisiae, results in derepression of the histone genes but does not confer cryptic TATA phenotypes.Rsite2: an efficient computational method to predict the functional sites of noncoding RNAs.The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM-barrel proteins.On the structural context and identification of enzyme catalytic residues.E1DS: catalytic site prediction based on 1D signatures of concurrent conservation.Computational Prediction of Phylogenetically Conserved Sequence Motifs for Five Different Candidate Genes in Type II Diabetic Nephropathy.Probalign: multiple sequence alignment using partition function posterior probabilities.Sequence-based enzyme catalytic domain prediction using clustering and aggregated mutual information content.Accurate sequence-based prediction of catalytic residues.Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.Structural Frameworks Suitable for EngineeringHow endoglucanase enzymes act on cellulose nanofibrils: role of amorphous regions revealed by atomistic simulations
P2860
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P2860
Predicting protein functional sites with phylogenetic motifs.
description
2005 nî lūn-bûn
@nan
2005年の論文
@ja
2005年学术文章
@wuu
2005年学术文章
@zh
2005年学术文章
@zh-cn
2005年学术文章
@zh-hans
2005年学术文章
@zh-my
2005年学术文章
@zh-sg
2005年學術文章
@yue
2005年學術文章
@zh-hant
name
Predicting protein functional sites with phylogenetic motifs.
@en
Predicting protein functional sites with phylogenetic motifs.
@nl
type
label
Predicting protein functional sites with phylogenetic motifs.
@en
Predicting protein functional sites with phylogenetic motifs.
@nl
prefLabel
Predicting protein functional sites with phylogenetic motifs.
@en
Predicting protein functional sites with phylogenetic motifs.
@nl
P2093
P356
P1433
P1476
Predicting protein functional sites with phylogenetic motifs.
@en
P2093
Brian Sutch
Dennis R Livesay
P304
P356
10.1002/PROT.20321
P407
P577
2005-02-01T00:00:00Z