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Minimum Information About a Simulation Experiment (MIASE)Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup LanguageBioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic modelsBioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.RightField: embedding ontology annotation in spreadsheetsThe SEEK: a platform for sharing data and models in systems biologyMinimum information requested in the annotation of biochemical models (MIRIAM)Enzymes or redox couples? The kinetics of thioredoxin and glutaredoxin reactions in a systems biology contextControl analysis for autonomously oscillating biochemical networks.SEEK: a systems biology data and model management platformDesign principles of nuclear receptor signaling: how complex networking improves signal transduction.Role of hexose transport in control of glycolytic flux in Saccharomyces cerevisiae.Web-based kinetic modelling using JWS Online.Data and model integration using JWS Online.Determining enzyme kinetics for systems biology with nuclear magnetic resonance spectroscopy.The Silicon Cell initiative: working towards a detailed kinetic description at the cellular level.Attractive models: how to make the silicon cell relevant and dynamic.Systems biology model databases and resources.Systems biology tools for toxicology.Heterogeneity of glycolytic oscillatory behaviour in individual yeast cells.Construction and validation of a detailed kinetic model of glycolysis in Plasmodium falciparum.The glycolytic flux in Escherichia coli is controlled by the demand for ATP.What it takes to understand and cure a living system: computational systems biology and a systems biology-driven pharmacokinetics-pharmacodynamics platform.Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis.A turbo engine with automatic transmission? How to marry chemicomotion to the subtleties and robustness of life.ECA: control in ecosystems.The extent to which ATP demand controls the glycolytic flux depends strongly on the organism and conditions for growth.Physiological implications of class IIa bacteriocin resistance in Listeria monocytogenes strains.Glutathione metabolism modeling: a mechanism for liver drug-robustness and a new biomarker strategy.Metabolic control in integrated biochemical systems.Yeast glycolytic oscillations that are not controlled by a single oscillophore: a new definition of oscillophore strength.Trade-off of dynamic fragility but not of robustness in metabolic pathways in silico.JWS online cellular systems modelling and microbiology.Towards building the silicon cell: a modular approach.From steady-state to synchronized yeast glycolytic oscillations II: model validation.Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex.From steady-state to synchronized yeast glycolytic oscillations I: model construction.An ffh mutant of Streptococcus mutans is viable and able to physiologically adapt to low pH in continuous culture.Intermediate instability at high temperature leads to low pathway efficiency for an in vitro reconstituted system of gluconeogenesis in Sulfolobus solfataricus.Allosteric regulation of phosphofructokinase controls the emergence of glycolytic oscillations in isolated yeast cells.
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