about
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogenyFast and sensitive multiple alignment of large genomic sequencesComputational prediction of transcription-factor binding site locationsDoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plantsStatistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequencyOf mice and men: phylogenetic footprinting aids the discovery of regulatory elementsIdentification of conserved regulatory elements by comparative genome analysisFrom sequence to structure and back again: approaches for predicting protein-DNA bindingPosition specific variation in the rate of evolution in transcription factor binding sitesSome statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail testThe 2006 NESCent Phyloinformatics Hackathon: A Field ReportConservation of Toll-Like Receptor Signaling Pathways in Teleost FishComprehensive analysis of orthologous protein domains using the HOPS databaseNemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsaeSigma: multiple alignment of weakly-conserved non-coding DNA sequence.Phylogeny based discovery of regulatory elements.EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequencesKBERG: KnowledgeBase for Estrogen Responsive Genes.Finding regulatory elements and regulatory motifs: a general probabilistic framework.Extracting transcription factor binding sites from unaligned gene sequences with statistical models.The complex spatio-temporal regulation of the Drosophila myoblast attractant gene duf/kirre.Genome-wide scans for footprints of natural selection.Genomic identification of regulatory elements by evolutionary sequence comparison and functional analysisEvaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.Identifying the conserved network of cis-regulatory sites of a eukaryotic genome.Phylogenetic analysis of 5'-noncoding regions from the ABA-responsive rab16/17 gene family of sorghum, maize and rice provides insight into the composition, organization and function of cis-regulatory modulesComputational approaches to identify promoters and cis-regulatory elements in plant genomes.FootPrinter: A program designed for phylogenetic footprinting.iRegulon: from a gene list to a gene regulatory network using large motif and track collections.Nonclassical regulation of transcription: interchromosomal interactions at the malic enzyme locus of Drosophila melanogaster.Genome-Wide Mapping of Collier In Vivo Binding Sites Highlights Its Hierarchical Position in Different Transcription Regulatory Networks.Molecular mechanisms of EGF signaling-dependent regulation of pipe, a gene crucial for dorsoventral axis formation in DrosophilaFactors influencing the identification of transcription factor binding sites by cross-species comparison.The orientation of transcription factor binding site motifs in gene promoter regions: does it matter?An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.Inference of self-regulated transcriptional networks by comparative genomicsAn algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data.Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells.Integrating sequence, evolution and functional genomics in regulatory genomics.Modulefinder: a tool for computational discovery of cis regulatory modules.
P2860
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P2860
description
2002 nî lūn-bûn
@nan
2002年の論文
@ja
2002年学术文章
@wuu
2002年学术文章
@zh-cn
2002年学术文章
@zh-hans
2002年学术文章
@zh-my
2002年学术文章
@zh-sg
2002年學術文章
@yue
2002年學術文章
@zh
2002年學術文章
@zh-hant
name
Algorithms for phylogenetic footprinting.
@en
Algorithms for phylogenetic footprinting.
@nl
type
label
Algorithms for phylogenetic footprinting.
@en
Algorithms for phylogenetic footprinting.
@nl
prefLabel
Algorithms for phylogenetic footprinting.
@en
Algorithms for phylogenetic footprinting.
@nl
P1476
Algorithms for phylogenetic footprinting.
@en
P2093
Martin Tompa
P304
P356
10.1089/10665270252935421
P577
2002-01-01T00:00:00Z