Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.
about
The second decade of 3C technologies: detailed insights into nuclear organizationAnalysis methods for studying the 3D architecture of the genomeLarge-scale chromatin organization: the good, the surprising, and the still perplexingUncovering transcription factor modules using one- and three-dimensional analysesCTCF: the protein, the binding partners, the binding sites and their chromatin loopsPairing of homologous regions in the mouse genome is associated with transcription but not imprinting statusSimulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains.Constructing 3D interaction maps from 1D epigenomes.HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure.Progress and challenges for chemical probing of RNA structure inside living cellsClosing the loop: 3C versus DNA FISHOn the demultiplexing of chromosome capture conformation dataThe intimate genome… in three dimensionsTopological domains in mammalian genomes identified by analysis of chromatin interactionsThe statistical-mechanics of chromosome conformation captureCHiCAGO: robust detection of DNA looping interactions in Capture Hi-C dataEnrichment analysis of Alu elements with different spatial chromatin proximity in the human genomeThe mutation spectrum in genomic late replication domains shapes mammalian GC contentUnderstanding spatial organizations of chromosomes via statistical analysis of Hi-C dataStatistical confidence estimation for Hi-C data reveals regulatory chromatin contactsSingle-cell Hi-C reveals cell-to-cell variability in chromosome structureA 3D map of the human genome at kilobase resolution reveals principles of chromatin loopingIterative correction of Hi-C data reveals hallmarks of chromosome organization.HiCNorm: removing biases in Hi-C data via Poisson regressionLarge-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data.Chromatin associations in Arabidopsis interphase nucleiLOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq dataThe sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modelingCombining a wavelet change point and the Bayes factor for analysing chromosomal interaction data.Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization.A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions.Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data.Restraint-based three-dimensional modeling of genomes and genomic domains.FourCSeq: analysis of 4C sequencing data.HiCdat: a fast and easy-to-use Hi-C data analysis tool.Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data.HiFive: a tool suite for easy and efficient HiC and 5C data analysisHiC-Pro: an optimized and flexible pipeline for Hi-C data processing.Hierarchical block matrices as efficient representations of chromosome topologies and their application for 3C data integration.Identifying and Reducing Systematic Errors in Chromosome Conformation Capture Data
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Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年学术文章
@wuu
2011年学术文章
@zh
2011年学术文章
@zh-cn
2011年学术文章
@zh-hans
2011年学术文章
@zh-my
2011年学术文章
@zh-sg
2011年學術文章
@yue
2011年學術文章
@zh-hant
name
Probabilistic modeling of Hi-C ...... obal chromosomal architecture.
@en
Probabilistic modeling of Hi-C ...... obal chromosomal architecture.
@nl
type
label
Probabilistic modeling of Hi-C ...... obal chromosomal architecture.
@en
Probabilistic modeling of Hi-C ...... obal chromosomal architecture.
@nl
prefLabel
Probabilistic modeling of Hi-C ...... obal chromosomal architecture.
@en
Probabilistic modeling of Hi-C ...... obal chromosomal architecture.
@nl
P2860
P356
P1433
P1476
Probabilistic modeling of Hi-C ...... obal chromosomal architecture.
@en
P2093
Amos Tanay
P2860
P2888
P304
P356
10.1038/NG.947
P407
P50
P577
2011-10-16T00:00:00Z