Simulating rare events in equilibrium or nonequilibrium stochastic systems.
about
Noise-induced Min phenotypes in E. coli.Specificity and completion time distributions of biochemical processesPath Similarity Analysis: A Method for Quantifying Macromolecular PathwaysSequential data assimilation for single-molecule FRET photon-counting data.Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations.Sampling rare events in nonequilibrium and nonstationary systems.Molecular dynamics-based approaches for enhanced sampling of long-time, large-scale conformational changes in biomolecules.Effects of macromolecular crowding on genetic networks.Modeling Viral Capsid Assembly.Simulations of the alternating access mechanism of the sodium symporter Mhp1.Evaporation rate of water in hydrophobic confinementEfficient and verified simulation of a path ensemble for conformational change in a united-residue model of calmodulin.Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities.DNA looping provides stability and robustness to the bacteriophage lambda switch.Estimating first-passage time distributions from weighted ensemble simulations and non-Markovian analyses.Using Bayes formula to estimate rates of rare events in transition path sampling simulations.Milestoning without a Reaction CoordinateEnhanced heterogeneous ice nucleation by special surface geometry.Revisiting and computing reaction coordinates with Directional Milestoning.Rapid exploration of configuration space with diffusion-map-directed molecular dynamicsEfficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories.Steady-state simulations using weighted ensemble path sampling.Kinetics of helix unfolding: molecular dynamics simulations with milestoning.An adaptive weighted ensemble procedure for efficient computation of free energies and first passage rates.Exact milestoning.Folding kinetics of a lattice protein via a forward flux sampling approach.Heterogeneous path ensembles for conformational transitions in semi-atomistic models of adenylate kinase.Reaction coordinates for the flipping of genetic switches.On the assumptions underlying milestoning.Rate constant and reaction coordinate of Trp-cage folding in explicit water.Nucleation of tetrahedral solids: A molecular dynamics study of supercooled liquid silicon.Milestoning with coarse memory.Adaptive single replica multiple state transition interface sampling.Transition path sampling for discrete master equations with absorbing states.Ice nucleation at the nanoscale probes no man's land of water.Nucleation pathways on complex networks.Automatic, optimized interface placement in forward flux sampling simulations.Rare-event sampling for driven inertial systems via the nonequilibrium distribution function.Limit of validity of Ostwald's rule of stages in a statistical mechanical model of crystallization.Kinetics and reaction coordinate for the isomerization of alanine dipeptide by a forward flux sampling protocol.
P2860
Q27339818-CFEE76C4-655B-4B47-88C0-B9AD2A47D369Q28268314-79E4712E-D843-4A42-8DD0-D48182E1D4B0Q28550431-82709174-D2F3-4368-AB8E-397670AAD905Q30967059-A5C39F98-89B6-42EE-A47A-8D1D19D60646Q31102557-982BBA2C-52C5-4886-8305-EAB98D611F1DQ34157179-F4D2954E-4012-47E4-A2D8-2B37A4B9143FQ34167258-4D13997E-1247-40E1-AEA1-5AD6D835F68EQ34243680-D379410B-75D9-4A3B-97FD-4006118966E5Q35052591-CF8566E0-E7BD-4889-95AF-2967C48457D3Q35556383-A9B490D1-B4B5-4093-B0A0-DA0750721EEEQ35849590-66FD0E73-67E5-434B-B756-AC1286D6416DQ36156755-98F20CCE-46D1-434A-9AD2-BB4772C0A37AQ36277148-F73A3619-7EB8-4E86-85F9-C2E7B8384EEDQ37202063-EC25D264-B890-4DF2-BF53-799954BB3540Q39721655-B9C397D1-DE48-405C-AF16-4AEAD766458DQ40450626-B1D8345A-2303-448C-9805-8F79A428E9FDQ41488434-FC71CD25-E819-4A0D-8040-7B0E68615AE9Q41811747-FA9E907C-B0C5-4ACE-805A-98849D77A94AQ41859162-9077BB9F-5F2D-4F3F-9704-C8844E6629ABQ41896859-649D2357-FB65-4644-A957-C35DC7095FD6Q41898830-E8948961-A1B8-4D79-94B4-A25DAF9D7C33Q42121147-1366041A-7354-42D1-A410-986045EBF526Q42145390-9A22874A-2C27-4DF1-AB7B-D7969D63FC71Q42556803-8120B657-96E7-4D93-94A7-0B0431E13E9AQ42557739-D4809C81-E7B6-4AE5-A236-FE6A83D55963Q42602879-AFB37E72-0701-495D-93B7-339F4359EC13Q42746630-3D589C68-EACA-4D4F-BEBF-185F5AB9245CQ43111559-639CC877-5B98-4F67-A4FA-5592754B1757Q43176529-72239D56-AEE1-4209-B747-508BC525AE45Q43222586-6D23BA7E-BD1B-4565-8CD5-8E23ED89C942Q43225904-F54E017D-FD16-4797-B717-C12EC3E9C300Q44026853-72991717-72E3-4C6C-9117-8F00C3EBA2AFQ44238247-00B31CF8-E7AC-4D37-A650-F80B0F7F8A26Q44846471-9B71E9A4-FB7D-46A8-BE8D-D87A7FC1C47CQ44884774-76C13795-7C8F-4D57-8780-B678CD8CEF46Q45170255-B8F23817-D523-439D-9650-F3A6479B92D4Q45337266-AF16C38A-8DD2-4938-94CD-A9AF44EFD8D7Q45874648-36844B1A-8BCD-44D8-AA90-67923F6458D8Q45931700-081065F9-8AEF-42A3-8C93-0B9CCC020941Q45967371-EF4F247B-A021-4C51-AE9C-D35AE11D2469
P2860
Simulating rare events in equilibrium or nonequilibrium stochastic systems.
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年学术文章
@wuu
2006年学术文章
@zh-cn
2006年学术文章
@zh-hans
2006年学术文章
@zh-my
2006年学术文章
@zh-sg
2006年學術文章
@yue
2006年學術文章
@zh
2006年學術文章
@zh-hant
name
Simulating rare events in equilibrium or nonequilibrium stochastic systems.
@en
Simulating rare events in equilibrium or nonequilibrium stochastic systems.
@nl
type
label
Simulating rare events in equilibrium or nonequilibrium stochastic systems.
@en
Simulating rare events in equilibrium or nonequilibrium stochastic systems.
@nl
prefLabel
Simulating rare events in equilibrium or nonequilibrium stochastic systems.
@en
Simulating rare events in equilibrium or nonequilibrium stochastic systems.
@nl
P2860
P50
P356
P1476
Simulating rare events in equilibrium or nonequilibrium stochastic systems
@en
P2093
Pieter Rein ten Wolde
P2860
P304
P356
10.1063/1.2140273
P407
P577
2006-01-01T00:00:00Z
P5875
P698
P818
cond-mat/0509499