Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria - Test2 - elhamkhani - TriplyDB

Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

http://www.wikidata.org/entity/Q21092874

about

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes The distributions, mechanisms, and structures of metabolite-binding riboswitches Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021 Abundance and functional diversity of riboswitches in microbial communities Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'Evidence for widespread gene control function by the ydaO riboswitch candidate Challenges of ligand identification for riboswitch candidates Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria Riboswitch effectors as protein enzyme cofactors Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA Identification of a large noncoding RNA in extremophilic eubacteria Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Guanine riboswitch variants from Mesoplasma florum selectively recognize 2'-deoxyguanosine Mechanism of mRNA destabilization by the glmS ribozyme Core requirements for glmS ribozyme self-cleavage reveal a putative pseudoknot structure The roles of metal ions in regulation by riboswitches Riboregulation in plant-associated α-proteobacteria A decade of riboswitches Recognition of S-adenosylmethionine by riboswitches Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011 Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch Structural principles of nucleoside selectivity in a 2′-deoxyguanosine riboswitch Metabolite recognition principles and molecular mechanisms underlying riboswitch function A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase Ribozymes, riboswitches and beyond: regulation of gene expression without proteins Comparative genomics of transcriptional regulation of methionine metabolism in Proteobacteria Prospects for riboswitch discovery and analysis Common themes and differences in SAM recognition among SAM riboswitches A survey of sRNA families in α-proteobacteria Riboswitches and the RNA world Tuning a riboswitch response through structural extension of a pseudoknot.

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P2860

Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

http://www.wikidata.org/entity/Q21092874

description

2005 nî lūn-bûn

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2005 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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Brian J Tucker

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Izabela Puskarz

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Jeffrey E Barrick

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Jinsoo Lim

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Keith A Corbino

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Maumita Mandal

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Noam D Rudnick

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Ronald R Breaker

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Rüdiger Welz

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The COG database: an updated version includes eukaryotes

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

An mRNA structure that controls gene expression by binding FMN

New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control

Modern metabolism as a palimpsest of the RNA world

An mRNA structure in bacteria that controls gene expression by binding lysine

The riboswitch-mediated control of sulfur metabolism in bacteria

Rfam: an RNA family database

Environmental genome shotgun sequencing of the Sargasso Sea

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