De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
about
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pestOptimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genomeA practical comparison of de novo genome assembly software tools for next-generation sequencing technologiesAssembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing dataShort-Read Sequencing for Genomic Analysis of the Brown Rot Fungus Fibroporia radiculosaActivin/Nodal signaling controls divergent transcriptional networks in human embryonic stem cells and in endoderm progenitorsRay: simultaneous assembly of reads from a mix of high-throughput sequencing technologiesRNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegyptiGenome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogenEvaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the resultsApplications of next generation sequencing in molecular ecology of non-model organismsDesign, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetidaNaming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic namesFunctional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease.Library preparation and data analysis packages for rapid genome sequencingIdentification of optimum sequencing depth especially for de novo genome assembly of small genomes using next generation sequencing data.DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing dataFine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.Next-generation sequence assembly: four stages of data processing and computational challengesAn NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.Assembly algorithms for next-generation sequencing data.De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing.TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasetsIdentification of transcripts up-regulated in asexual and sexual fruiting bodies of the Dutch elm disease pathogen Ophiostoma novo-ulmi.Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera.Value of a newly sequenced bacterial genomeDe novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq.Software for pre-processing Illumina next-generation sequencing short read sequences.Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage mapGene genealogies reveal cryptic species and host preferences for the pine fungal pathogen Grosmannia clavigera.Characterizing homologues of crop domestication genes in poorly described wild relatives by high-throughput sequencing of whole genomes.The genome sequence of the North-European cucumber (Cucumis sativus L.) unravels evolutionary adaptation mechanisms in plants.diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing dataA new strategy for better genome assembly from very short reads.Next-generation sequencing techniques for eukaryotic microorganisms: sequencing-based solutions to biological problems.Sequence-specific error profile of Illumina sequencers.Graph accordance of next-generation sequence assemblies.Visual analysis of the quantitative composition of metagenomic communities: the AmphoraVizu webserver.Coverage bias and sensitivity of variant calling for four whole-genome sequencing technologies
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P2860
De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
description
2009 nî lūn-bûn
@nan
2009 թուականին հրատարակուած գիտական յօդուած
@hyw
2009 թվականին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
De novo genome sequence assemb ...... 454 and Illumina sequence data
@ast
De novo genome sequence assemb ...... 454 and Illumina sequence data
@en
De novo genome sequence assemb ...... 454 and Illumina sequence data
@en-gb
De novo genome sequence assemb ...... 454 and Illumina sequence data
@nl
type
label
De novo genome sequence assemb ...... 454 and Illumina sequence data
@ast
De novo genome sequence assemb ...... 454 and Illumina sequence data
@en
De novo genome sequence assemb ...... 454 and Illumina sequence data
@en-gb
De novo genome sequence assemb ...... 454 and Illumina sequence data
@nl
prefLabel
De novo genome sequence assemb ...... 454 and Illumina sequence data
@ast
De novo genome sequence assemb ...... 454 and Illumina sequence data
@en
De novo genome sequence assemb ...... 454 and Illumina sequence data
@en-gb
De novo genome sequence assemb ...... 454 and Illumina sequence data
@nl
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De novo genome sequence assemb ...... 454 and Illumina sequence data
@en
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Colette Breuil
Darren Platt
Gordon Robertson
Marco A Marra
Michael Seidel
Nancy Y Liao
Robert A Holt
Scott Diguistini
Simon K Chan
Steven Jm Jones
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P2888
P3181
P356
10.1186/GB-2009-10-9-R94
P407
P577
2009-01-01T00:00:00Z
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P6179
1013301186