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Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckiiDe novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence dataDraft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pestEvolution of an adenocarcinoma in response to selection by targeted kinase inhibitorsAssembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing dataGenome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogenSomatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin.Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasisSubgroup-specific structural variation across 1,000 medulloblastoma genomesABySS: a parallel assembler for short read sequence dataCircos: an information aesthetic for comparative genomicsWhole-genome sequencing and social-network analysis of a tuberculosis outbreakGenomic and epigenomic landscapes of adult de novo acute myeloid leukemia.The clonal and mutational evolution spectrum of primary triple-negative breast cancersKonnector v2.0: pseudo-long reads from paired-end sequencing data.Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.ntCard: a streaming algorithm for cardinality estimation in genomics data.Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-artABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.De novo assembly and analysis of RNA-seq data.The genome sequence of the spontaneously hypertensive rat: Analysis and functional significanceEvolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liverUpdated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees.Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assembliesA clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.mrsFAST: a cache-oblivious algorithm for short-read mapping.JAGuaR: junction alignments to genome for RNA-seq readsGenome sequence of Mycoplasma capricolum subsp. capripneumoniae strain M1601.DIDA: Distributed Indexing Dispatched Alignment.De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.Sealer: a scalable gap-closing application for finishing draft genomes.Large-scale profiling of microRNAs for The Cancer Genome Atlas.LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.Dissect: detection and characterization of novel structural alterations in transcribed sequencesGenetic alterations activating kinase and cytokine receptor signaling in high-risk acute lymphoblastic leukemia.NanoSim: nanopore sequence read simulator based on statistical characterizationOrganellar Genomes of White Spruce (Picea glauca): Assembly and AnnotationThe genetic landscape of high-risk neuroblastoma.Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
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description
researcher, ORCID id # 0000-0003-0950-7839
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wetenschapper
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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Inanc Birol
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P106
P1153
35298470000
P31
P496
0000-0003-0950-7839