Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
about
Genome-wide chromatin remodeling identified at GC-rich long nucleosome-free regionsWeakly positioned nucleosomes enhance the transcriptional competency of chromatinQuantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome associationProximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brainNucleosome-coupled expression differences in closely-related speciesActive VSG expression sites in Trypanosoma brucei are depleted of nucleosomesA high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioningPredicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activitiesEpigenomics and the structure of the living genomeGenome-Wide Analysis of Nucleosome Positions, Occupancy, and Accessibility in Yeast: Nucleosome Mapping, High-Resolution Histone ChIP, and NCAMMechanisms and consequences of alternative polyadenylationLinking genome to epigenomeCooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae.The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomesDistinguishing direct versus indirect transcription factor-DNA interactions.Bidirectional promoters generate pervasive transcription in yeastEpigenetics in cancerAn integrated model of transcription factor diffusion shows the importance of intersegmental transfer and quaternary protein structure for target site finding.Histone hypoacetylation-activated genes are repressed by acetyl-CoA- and chromatin-mediated mechanism.Integrity of chromatin and replicating DNA in nuclei released from fission yeast by semi-automated grinding in liquid nitrogen.Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expressionT-KDE: a method for genome-wide identification of constitutive protein binding sites from multiple ChIP-seq data setsNovel Gene Discovery in the Human Malaria Parasite using Nucleosome Positioning Data.NucVoter: A Voting Algorithm for Reliable Nucleosome Prediction Using Next-Generation Sequencing Data.Nucleosome positioning from tiling microarray data.Distinct modes of regulation by chromatin encoded through nucleosome positioning signalsThe impact of the nucleosome code on protein-coding sequence evolution in yeastTwo distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence.Transcriptional interaction-assisted identification of dynamic nucleosome positioningHierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications.Insights into distinct regulatory modes of nucleosome positioning.Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genomeNew insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome.Genome-wide maps of mononucleosomes and dinucleosomes containing hyperacetylated histones of Aspergillus fumigatusHigh-resolution nucleosome mapping reveals transcription-dependent promoter packaging.Nucleosome positioning by genomic excluding-energy barriers.Natural single-nucleosome epi-polymorphisms in yeast.Effects of Alu elements on global nucleosome positioning in the human genome.Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning.
P2860
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P2860
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
description
2008 nî lūn-bûn
@nan
2008 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի մարտին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Dynamic remodeling of individu ...... o transcriptional perturbation
@ast
Dynamic remodeling of individu ...... o transcriptional perturbation
@en
Dynamic remodeling of individu ...... o transcriptional perturbation
@en-gb
Dynamic remodeling of individu ...... o transcriptional perturbation
@nl
type
label
Dynamic remodeling of individu ...... o transcriptional perturbation
@ast
Dynamic remodeling of individu ...... o transcriptional perturbation
@en
Dynamic remodeling of individu ...... o transcriptional perturbation
@en-gb
Dynamic remodeling of individu ...... o transcriptional perturbation
@nl
altLabel
Dynamic Remodeling of Individu ...... o Transcriptional Perturbation
@en
prefLabel
Dynamic remodeling of individu ...... o transcriptional perturbation
@ast
Dynamic remodeling of individu ...... o transcriptional perturbation
@en
Dynamic remodeling of individu ...... o transcriptional perturbation
@en-gb
Dynamic remodeling of individu ...... o transcriptional perturbation
@nl
P2093
P2860
P3181
P1433
P1476
Dynamic remodeling of individu ...... o transcriptional perturbation
@en
P2093
Akshay Bhinge
Sushma Shivaswamy
Vishwanath R Iyer
Yongjun Zhao
P2860
P3181
P356
10.1371/JOURNAL.PBIO.0060065
P407
P577
2008-03-18T00:00:00Z