The impact of the nucleosome code on protein-coding sequence evolution in yeast
about
Strong purifying selection at synonymous sites in D. melanogasterThe interface of protein structure, protein biophysics, and molecular evolutionLagging-strand replication shapes the mutational landscape of the genomeLow structural variation in the host-defense peptide repertoire of the dwarf clawed frog Hymenochirus boettgeri (Pipidae)GC Content Heterogeneity Transition of Conserved Noncoding Sequences Occurred at the Emergence of VertebratesNucleosomes shape DNA polymorphism and divergence.Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair.Nucleosome positioning: how is it established, and why does it matter?Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast.The organization of nucleosomes around splice sites.Evidence of association between nucleosome occupancy and the evolution of transcription factor binding sites in yeast.Evidence for a high mutation rate at rapidly evolving yeast centromeresThe role of nucleosome positioning in the evolution of gene regulation.Synonymous but not the same: the causes and consequences of codon biasSynonymous codon bias and functional constraint on GC3-related DNA backbone dynamics in the prokaryotic nucleoid.Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity.Evolution of cis-regulatory elements in yeast de novo and duplicated new genesNucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific mannerBiological basis of miRNA action when their targets are located in human protein coding regionDrosophila functional elements are embedded in structurally constrained sequences.Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base compositionCOMIT: identification of noncoding motifs under selection in coding sequences.Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution.Impact of chromatin structure on sequence variability in the human genome.Widespread signatures of recent selection linked to nucleosome positioning in the human lineage.Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.The effects of chromatin organization on variation in mutation rates in the genome.Evidence of selection for an accessible nucleosomal array in humanTranslation Efficiency in Upstream Region of microRNA Targets in Arabidopsis thaliana.Genomic approaches to DNA repair and mutagenesis.A deformation energy-based model for predicting nucleosome dyads and occupancyFitness landscape for nucleosome positioningLimitations of the 'ambush hypothesis' at the single-gene scale: what codon biases are to blame?Estimating the prevalence of functional exonic splice regulatory information.Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation.A species-specific nucleosomal signature defines a periodic distribution of amino acids in proteins.Nucleosomal context of binding sites influences transcription factor binding affinity and gene regulation.Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome.Nucleosomes are well positioned in exons and carry characteristic histone modifications.Codons support the maintenance of intrinsic DNA polymer flexibility over evolutionary timescales
P2860
Q24810381-750864A6-E873-497A-BBDC-5DBB0B3276BEQ26863623-D2A6D088-F5AD-4127-B4FB-B28FBB6946CCQ28255984-6E49BF29-9BB5-4434-A2EB-97FFB0FA0931Q28539024-B00D85CA-073D-4949-B635-B9CED3A00834Q28818311-205FC7CB-2DE4-48B0-BAB3-374DE9439AF9Q31171686-076C7DE1-65FF-41E7-BCCA-F9EF113731AEQ33654639-7B69724F-E97F-44E5-8909-40D19EE5AAFBQ33695266-446C975B-1637-46D5-A923-EE676A9E1173Q33784572-15CA6D2D-5D17-411D-A9E5-3FF928757C4AQ33871238-107D0070-B9EC-44BB-8F15-B36A701B4648Q33917483-FD00C447-FC65-4394-BB73-131FCDEE3A11Q33964417-47D2ABF7-923A-42B8-BC58-46C8DAD16B26Q33964627-ACFA82BD-8B08-4371-B9CA-E8D78CA93B12Q34151543-48B3C9C9-5D31-4A3C-AB8D-5A38F1D66180Q34248905-622B3A3A-9BE5-497B-B91C-F5B1E29990EAQ34321074-67CB1A9D-D75F-4DD1-8443-D34CAD2D6DB7Q34519001-9B6D4E7D-7751-4A36-B935-0EC55227992DQ34531199-36B2E475-E881-4E0B-8078-E9ED3CF85360Q34721125-08B865A4-E582-4369-9F2A-AA7CD430A968Q34764038-699D5955-FD54-4FBB-88B4-8EEF3F453C40Q34908609-5B9B3A89-34B6-4BDF-9E39-431440313748Q34964671-EED459EB-FEF8-4BA6-886B-7F4B1A6A41CEQ35053021-67D6F5EE-F10C-4C4F-AC6F-F04545EA57CFQ35281209-35A4E13E-86E0-49E4-A4ED-0DE040F23DD3Q35493735-A424A676-4E51-4C65-94CB-D38BA6AECF2CQ35493886-61CC52C8-FED5-4BCD-8613-51D8B7E73430Q35845235-E36C5EBE-520D-4D54-9D84-8385BFD0B4B9Q36089885-F9F9A0AC-363B-4264-9D29-AD19C659E377Q36312175-C3CD0B17-835A-478E-B5ED-FB303353566DQ36395930-F09874CB-820D-4F40-93A6-2234428B7A45Q36774430-F95462D9-3B2F-4080-AC03-275DF7C15F1AQ36990975-DA34A0B4-247A-4BAF-B640-CDEF5922F9CBQ39114871-4A3F5B44-9082-4810-840C-4F4043183B88Q39239706-2D068743-3723-4416-8A41-2CFE5E7ADB5EQ39939460-2F7BFCF1-A44E-4137-98B4-792A86E42260Q40352676-D3C72991-30F8-400A-BB27-40B856926103Q41360810-C430F257-5E87-4AB0-8461-6026E0A839DBQ41634652-89FEF76B-9D90-42B8-A784-11754E5E6804Q41863525-DE53109D-4FB2-49AF-B4F2-EBB057409B94Q41931187-90A3E8B1-D141-4AE2-B895-9F571F6296AA
P2860
The impact of the nucleosome code on protein-coding sequence evolution in yeast
description
2008 nî lūn-bûn
@nan
2008 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
The impact of the nucleosome code on protein-coding sequence evolution in yeast
@ast
The impact of the nucleosome code on protein-coding sequence evolution in yeast
@en
type
label
The impact of the nucleosome code on protein-coding sequence evolution in yeast
@ast
The impact of the nucleosome code on protein-coding sequence evolution in yeast
@en
prefLabel
The impact of the nucleosome code on protein-coding sequence evolution in yeast
@ast
The impact of the nucleosome code on protein-coding sequence evolution in yeast
@en
P2860
P50
P1433
P1476
The impact of the nucleosome code on protein-coding sequence evolution in yeast
@en
P2860
P304
P356
10.1371/JOURNAL.PGEN.1000250
P577
2008-11-07T00:00:00Z