Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. - Test2 - elhamkhani - TriplyDB

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

http://www.wikidata.org/entity/Q24537656

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The DISC1 pathway modulates expression of neurodevelopmental, synaptogenic and sensory perception genes Multi-targeted mechanisms underlying the endothelial protective effects of the diabetic-safe sweetener erythritol A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection Alternative splicing events are a late feature of pathology in a mouse model of spinal muscular atrophy Genome-wide matching of genes to cellular roles using guilt-by-association models derived from single sample analysis Chipster: user-friendly analysis software for microarray and other high-throughput data Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations Algorithm-driven artifacts in median polish summarization of microarray data Comprehensive analysis of PPARalpha-dependent regulation of hepatic lipid metabolism by expression profiling Butyrate-induced transcriptional changes in human colonic mucosa Chimeric EWSR1-FLI1 regulates the Ewing sarcoma susceptibility gene EGR2 via a GGAA microsatellite Tight junction-associated MARVEL proteins marveld3, tricellulin, and occludin have distinct but overlapping functions Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation Development and application of a DNA microarray-based yeast two-hybrid system Germinal centre protein HGAL promotes lymphoid hyperplasia and amyloidosis via BCR-mediated Syk activation FOXP3 up-regulates p21 expression by site-specific inhibition of histone deacetylase 2/histone deacetylase 4 association to the locus EMRE is an essential component of the mitochondrial calcium uniporter complex Calreticulin is the dominant pro-phagocytic signal on multiple human cancers and is counterbalanced by CD47 ConceptGen: a gene set enrichment and gene set relation mapping tool The CD47-signal regulatory protein alpha (SIRPa) interaction is a therapeutic target for human solid tumors Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity Review of the literature examining the correlation among DNA microarray technologies FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription GAGE: generally applicable gene set enrichment for pathway analysis The end of the microarray Tower of Babel: will universal standards lead the way?Dysregulation of X-linked gene expression in Klinefelter's syndrome and association with verbal cognition Microarray experiments and factors which affect their reliability Plasticity of blood- and lymphatic endothelial cells and marker identification Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway Dietary protein affects gene expression and prevents lipid accumulation in the liver in mice Profiling of luteal transcriptome during prostaglandin F2-alpha treatment in buffalo cows: analysis of signaling pathways associated with luteolysis Gene expression profiling of preovulatory follicle in the buffalo cow: effects of increased IGF-I concentration on periovulatory events SMARCA4/BRG1 Is a Novel Prognostic Biomarker Predictive of Cisplatin-Based Chemotherapy Outcomes in Resected Non-Small Cell Lung Cancer Alterations in hepatic one-carbon metabolism and related pathways following a high-fat dietary intervention User-friendly solutions for microarray quality control and pre-processing on ArrayAnalysis.org Molecular pathways involved in prostate carcinogenesis: insights from public microarray datasets Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder Large-scale integration of microarray data reveals genes and pathways common to multiple cancer types Gene expression profiling of immune-competent human cells exposed to engineered zinc oxide or titanium dioxide nanoparticles

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Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

http://www.wikidata.org/entity/Q24537656

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2005 nî lūn-bûn

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2005 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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Fan Meng

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Georgi Kostov

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P2860

Initial sequencing and analysis of the human genome

Bioconductor: open software development for computational biology and bioinformatics

Finishing the euchromatic sequence of the human genome

Significance analysis of microarrays applied to the ionizing radiation response

A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array

NCBI GEO: mining millions of expression profiles--database and tools

Alternative mapping of probes to genes for Affymetrix chips

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

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10.1093/NAR/GNI179

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