Solving the riddle of codon usage preferences: a test for translational selection - Test2 - elhamkhani - TriplyDB

Solving the riddle of codon usage preferences: a test for translational selection

Solving the riddle of codon usage preferences: a test for translational selection

http://www.wikidata.org/entity/Q24563914

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Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid A periodic pattern of mRNA secondary structure created by the genetic code Coevolution of DNA uptake sequences and bacterial proteomes Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation Variation in the strength of selected codon usage bias among bacteria Strong purifying selection at synonymous sites in D. melanogaster Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals Decoding mechanisms by which silent codon changes influence protein biogenesis and function Multiple roles of the coding sequence 5' end in gene expression regulation Computational tools and algorithms for designing customized synthetic genes Selection for reduced translation costs at the intronic 5' end in fungi Energy efficiency trade-offs drive nucleotide usage in transcribed regions The Reference Genome of the Halophytic Plant Eutrema salsugineum Association between translation efficiency and horizontal gene transfer within microbial communities Co-evolutionary networks of genes and cellular processes across fungal species Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes Evolution and functional impact of rare coding variation from deep sequencing of human exomes Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus The Evolutionary Basis of Translational Accuracy in Plants.Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions.A horizontal alignment tool for numerical trend discovery in sequence data: application to protein hydropathy.Determinants of protein abundance and translation efficiency in S. cerevisiae Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation.Mean of the typical decoding rates: a new translation efficiency index based on the analysis of ribosome profiling data.Rapid divergence of codon usage patterns within the rice genome.Posttranscriptional expression regulation: what determines translation rates?Chromatin structure and evolution in the human genome.The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis.Analysis of the distribution of functionally relevant rare codons.Differential selection on gene translation efficiency between the filamentous fungus Ashbya gossypii and yeasts.Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast.ESTPiper--a web-based analysis pipeline for expressed sequence tags.Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation.Bacillus anthracis genome organization in light of whole transcriptome sequencing Mutation bias favors protein folding stability in the evolution of small populations Predicting the dynamics of protein abundance.Selection on synonymous codons in mammalian rhodopsins: a possible role in optimizing translational processes Translational selection is ubiquitous in prokaryotes Natural selection retains overrepresented out-of-frame stop codons against frameshift peptides in prokaryotes.

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Solving the riddle of codon usage preferences: a test for translational selection

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2004 nî lūn-bûn

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2004 թուականին հրատարակուած գիտական յօդուած

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2004年の論文

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Solving the riddle of codon usage preferences: a test for translational selection

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Solving the riddle of codon usage preferences: a test for translational selection

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Solving the riddle of codon usage preferences: a test for translational selection

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Solving the riddle of codon usage preferences: a test for translational selection

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Lorenz Wernisch

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Mario dos Reis

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Renos Savva

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The complete genome sequence of the gram-positive bacterium Bacillus subtilis

Evolutionary Rate at the Molecular Level

Initial sequencing and comparative analysis of the mouse genome

Codon usage: mutational bias, translational selection, or both?

The 'effective number of codons' used in a gene

Codon selection in yeast

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

Synonymous codon usage is subject to selection in thermophilic bacteria.

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

Replicational and transcriptional selection on codon usage in Borrelia burgdorferi

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10.1093/NAR/GKH834

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