Widespread plasticity in CTCF occupancy linked to DNA methylation - Test2 - elhamkhani - TriplyDB

Widespread plasticity in CTCF occupancy linked to DNA methylation

Widespread plasticity in CTCF occupancy linked to DNA methylation

http://www.wikidata.org/entity/Q24608987

about

What does our genome encode?Longitudinal epigenetic variation of DNA methyltransferase genes associated with vulnerability to post-traumatic stress disorder (PTSD)The Evolution of Epigenetics: From Prokaryotes to Humans and Its Biological Consequences A Comparative Analysis of Genetic and Epigenetic Events of Breast and Ovarian Cancer Related to Tumorigenesis A promising hypothesis of c-KIT methylation/ expression paradox in c-KIT (+) squamous cell carcinoma of uterine cervix ----- CTCF transcriptional repressor regulates c-KIT proto-oncogene expression CTCF: an architectural protein bridging genome topology and function "Seq-ing" insights into the epigenetics of neuronal gene regulation Cross-talk between site-specific transcription factors and DNA methylation states A brief review on the Human Encyclopedia of DNA Elements (ENCODE) project The role of chromatin insulators in nuclear architecture and genome function Epigenetics, chromatin and genome organization: recent advances from the ENCODE project CTCF: the protein, the binding partners, the binding sites and their chromatin loops Targeting CTCF to Control Virus Gene Expression: A Common Theme amongst Diverse DNA Viruses Role of CTCF protein in regulating FMR1 locus transcription The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements T-KDE: a method for genome-wide identification of constitutive protein binding sites from multiple ChIP-seq data sets Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline.CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer Accumulation of CTCF-binding sites drives expression divergence between tandemly duplicated genes in humans.Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes Human-specific epigenetic variation in the immunological Leukotriene B4 Receptor (LTB4R/BLT1) implicated in common inflammatory diseases YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development.Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer.Evolution of transcription factor binding in metazoans - mechanisms and functional implications.Architectural proteins: regulators of 3D genome organization in cell fate Genomic discovery of potent chromatin insulators for human gene therapy.Transcription factor binding dynamics during human ES cell differentiation Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes.3D Chromosome Regulatory Landscape of Human Pluripotent Cells.Insulator dysfunction and oncogene activation in IDH mutant gliomas.Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control.Fatty acid binding protein 3 (fabp3) is associated with insulin, lipids and cardiovascular phenotypes of the metabolic syndrome through epigenetic modifications in a Northern European family population.The high mobility group A2 protein epigenetically silences the Cdh1 gene during epithelial-to-mesenchymal transition Characterization of constitutive CTCF/cohesin loci: a possible role in establishing topological domains in mammalian genomes.Identification and characterization of enhancer-blocking insulators to reduce retroviral vector genotoxicity Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal TFIIH subunit alterations causing xeroderma pigmentosum and trichothiodystrophy specifically disturb several steps during transcription.

P2860

Q22065765-5C95178A-EDF0-4787-B2CF-C465F6A294AC Q23916604-1A8C7F00-8068-4F0B-BF13-FFB001D72F84 Q26741938-6071B955-1629-4A94-8992-F7E56B6B6D3D Q26746952-43044163-918A-41C2-9523-EDFF74C3C585 Q26775443-AE4D4998-2F54-4BA0-BB10-DFD6DD3A77C1 Q26823453-1478CE53-BC02-40C9-82F3-DBDAAA1D0D15 Q26859884-7C49FEDF-80C0-4792-ABB1-53EB400FCBC0 Q26860809-F96A1FAA-2EDE-4C3F-B8F1-3F14356756D2 Q27001063-09F6AD2D-17DF-4B49-A6F1-4DA1DCFD4529 Q27010832-608C2220-3AAB-40AC-BDDA-2D9634ADB3DF Q27024835-140652B8-8718-496D-915F-2687DC2E900C Q27028081-F3E6BA41-AF07-4067-84F6-23F7E670D1D0 Q28083589-74D8F085-C23B-4151-A3C5-E58849A84376 Q28534708-D68EAED6-B391-494E-ADFF-8636232F2F89 Q28828237-1BC2B797-D9EC-4FC0-BCAB-EE4929886560 Q30734362-B61D7650-57FE-4983-8B14-CCD036703F30 Q33657704-3BC23059-4940-49D9-AF93-8847C264A782 Q33692429-4213A1DE-9CFF-44D6-AC94-BC745225B65E Q33715680-B2C17543-73B4-4A6D-B093-3ADC0C006BF8 Q33742677-14DBBF39-074D-4BE6-80A0-51B60BCC272A Q33751432-9BB0E6B3-EF42-4E4E-B7E9-2927863C33D7 Q33772590-31F1816C-B09E-4E80-B62B-2334F4506AD0 Q33865154-2504400C-2BC8-46A0-986D-81F2662AF4CB Q34040886-181A484B-FFC4-4B91-B6CC-C657DED93637 Q34075540-FD8A22DC-521A-4E5D-8518-7E4EE779CC3D Q34153828-F8E21400-E629-44C5-B365-0BE03B98255D Q34245588-7BE6BB19-17EA-466F-841E-A9AE31008A92 Q34438433-4624DD45-C3B1-4E08-B8B9-C40F72D6EB7E Q34457712-BD3AA074-CA65-4715-ABA0-850D6D021260 Q34463538-1282C1E4-D6F7-4CA9-80FE-160AD6BA0606 Q34504055-455F3CE9-9AAA-458B-855B-E1E4A32B5516 Q34505845-66CE05FB-C7A8-4034-A2C5-3AD23F8CE596 Q34506441-762CE867-2C8B-4C67-859D-6CAC6CC76B1A Q34545070-9AA51C05-A292-44DE-A62E-DE90156C1077 Q34627551-67B67864-C1EF-4FB6-8DC1-DD7695FB60A7 Q34883377-51788C47-D119-49A9-B01E-40CC561C2438 Q34941063-7B3E44F3-CC19-4936-AA4A-E17DE27F6D62 Q35009501-0464839E-330D-40A0-B4E3-2AF279A86196 Q35049401-EB2373A2-AFB1-4206-9E21-1102C5CCB8E6 Q35059373-7FA3CEB9-B8DB-4FEF-BF30-D015DDF89675

P2860

Widespread plasticity in CTCF occupancy linked to DNA methylation

http://www.wikidata.org/entity/Q24608987

description

2012 nî lūn-bûn

@nan

2012 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի սեպտեմբերին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

Widespread plasticity in CTCF occupancy linked to DNA methylation

@ast

Widespread plasticity in CTCF occupancy linked to DNA methylation

@en

Widespread plasticity in CTCF occupancy linked to DNA methylation

@nl

type

label

Widespread plasticity in CTCF occupancy linked to DNA methylation

@ast

Widespread plasticity in CTCF occupancy linked to DNA methylation

@en

Widespread plasticity in CTCF occupancy linked to DNA methylation

@nl

prefLabel

Widespread plasticity in CTCF occupancy linked to DNA methylation

@ast

Widespread plasticity in CTCF occupancy linked to DNA methylation

@en

Widespread plasticity in CTCF occupancy linked to DNA methylation

@nl

P1433

Q24608987-86329AEF-7C37-4650-B52E-0D225B27BDAD

P1476

Q24608987-145F2AB6-3B38-4A7F-B8AC-BB743E3FA865

P2093

Q24608987-0B6C703B-463B-4379-B8D2-4646B9082D1B

Q24608987-2543FCCA-7BBE-475A-B46C-286049BD2F54

Q24608987-385D423E-F58E-4B83-AC4F-DD5FE4139CC1

Q24608987-38C49430-9942-4579-8A60-305111B3B6E2

Q24608987-3F46B4B8-23EE-43F8-A64C-CC6D1A5C1E27

Q24608987-5F25F9F8-682F-46AB-B366-BCDF02C58ED0

Q24608987-A25B243A-5D3F-4CE9-A67E-8EFE8FC863B3

Q24608987-D62638CE-63B6-4391-B9C7-4CDE82B7575A

Q24608987-DC9F65EE-E7AA-4F18-B509-8D8DD6AE95C9

Q24608987-E6DAD874-2D1E-4133-8973-84CE31C7F9D1

P2860

Q24608987-01569F48-4D2C-42CD-839C-13E3465BFD89

Q24608987-06342E88-D7B0-4CEC-9938-BE833B5A1144

Q24608987-0C9AD895-DB7C-4AC2-9283-F20508865163

Q24608987-0FC4BF0F-D6DB-4FFC-8F60-C7C33743C975

Q24608987-14BF4F48-F2ED-4DCA-8FAF-912E7F9D964B

Q24608987-164039AD-37A7-4EDC-8116-023A57E0E350

Q24608987-1993097A-9451-48FC-B2EF-AA5292DCB58E

Q24608987-1D3F0100-08D6-43F4-B3DA-313D1D554DD7

Q24608987-1DEE463D-8AF3-4308-BBC2-EA363AF73986

Q24608987-1EBEF133-BE0D-490B-B413-661631CE9DDC

P304

Q24608987-03A6FF12-B40A-4979-B224-CFCF224F8798

P31

Q24608987-9C4D7CAD-1BFF-45FC-AA0B-499A1EEB61CD

P3181

Q24608987-DE3A5CC9-E04B-4935-B15E-34FC0A871E78

P356

Q24608987-6C958B4D-BF33-48F0-B37C-419B65DDA73C

P407

Q24608987-91878ED9-AD18-4CF7-A7D6-CB38A89AF3E8

P433

Q24608987-E18EE93B-DE07-4479-88E8-7F9397AD8BE7

P478

Q24608987-8868A998-83F5-4F60-8A92-39C544D06E30

P50

Q24608987-4AF22489-27CD-4BA3-B1A3-34ED40DF4C10

Q24608987-5B5B00A3-77C2-47BB-A986-53EC80B679D3

Q24608987-E4B8218F-8EE5-40EB-A863-F99EA42B3F01

P577

Q24608987-A96412FE-BA39-4373-849E-A62F2FD6500D

P5875

Q24608987-4EBD4EC0-B1F8-448C-8A97-FC4C7C68FF95

P698

Q24608987-24A98D67-DE2A-49DF-AB5E-8F1E15576FAC

P921

Q24608987-B938AFA8-CBE8-464C-B8D7-79D3416B29C4

P932

Q24608987-BF744508-E604-4C0D-9BE3-BF0DF3529BB6

P3181

P356

P1433

Genome Research

P1476

Widespread plasticity in CTCF occupancy linked to DNA methylation

@en

P2093

Florencia Pauli

http://www.w3.org/2001/XMLSchema#string

Hao Wang

http://www.w3.org/2001/XMLSchema#string

Hongzhu Qu

http://www.w3.org/2001/XMLSchema#string

John A Stamatoyannopoulos

http://www.w3.org/2001/XMLSchema#string

Kristen Lee

http://www.w3.org/2001/XMLSchema#string

Matthew T Maurano

http://www.w3.org/2001/XMLSchema#string

Molly Weaver

http://www.w3.org/2001/XMLSchema#string

Rajinder Kaul

http://www.w3.org/2001/XMLSchema#string

Richard M Myers

http://www.w3.org/2001/XMLSchema#string

Robert E Thurman

http://www.w3.org/2001/XMLSchema#string

P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Differential expression analysis for sequence count data

Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci

The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

A widely expressed transcription factor with multiple DNA sequence specificity, CTCF, is localized at chromosome segment 16q22.1 within one of the smallest regions of overlap for common deletions in breast and prostate cancers

CTCF physically links cohesin to chromatin

The accessible chromatin landscape of the human genome

Human DNA methylomes at base resolution show widespread epigenomic differences

CTCF-dependent enhancer-blocking by alternative chromatin loop formation

P304

1680-1688

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P3181

1549008

http://www.w3.org/2001/XMLSchema#string

P356

10.1101/GR.136101.111

http://www.w3.org/2001/XMLSchema#string

P407

P433

9

http://www.w3.org/2001/XMLSchema#string

P478

22

http://www.w3.org/2001/XMLSchema#string

P50

Richard Sandstrom

Katherine E Varley

P577

2012-09-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

230811288

http://www.w3.org/2001/XMLSchema#string

P698

22955980

http://www.w3.org/2001/XMLSchema#string

P921

DNA methylation

P932

3431485

http://www.w3.org/2001/XMLSchema#string