COMBREX: a project to accelerate the functional annotation of prokaryotic genomes - Test2 - elhamkhani - TriplyDB

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

http://www.wikidata.org/entity/Q24611270

about

The COMBREX project: design, methodology, and initial results.The methylomes of six bacteria.The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection CharProtDB: a database of experimentally characterized protein annotations Synthetic Ecology of Microbes: Mathematical Models and Applications The other face of restriction: modification-dependent enzymes The Combined Structural and Kinetic Characterization of a Bacterial Nitronate Monooxygenase from Pseudomonas aeruginosa PAO1 Establishes NMO Class I and II The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes Functional Annotation of a Presumed Nitronate Monoxygenase Reveals a New Class of NADH:Quinone Reductases Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps.Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions.Solving the Problem: Genome Annotation Standards before the Data Deluge.Accurate evaluation and analysis of functional genomics data and methods Deep sequencing of the oral microbiome reveals signatures of periodontal disease.Towards an informative mutant phenotype for every bacterial gene.EcoGene 3.0.Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.Databases for Microbiologists Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships.Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes COMBREX: COMputational BRidge to EXperiments.Metabolic proximity in the order of colonization of a microbial community.PANADA: protein association network annotation, determination and analysis.LUD, a new protein domain associated with lactate utilization.Biochemical functional predictions for protein structures of unknown or uncertain function Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.Inference of functional properties from large-scale analysis of enzyme superfamilies.A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes.A novel family of bacterial dioxygenases that catalyse the hydroxylation of free L-amino acids.

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

http://www.wikidata.org/entity/Q24611270

description

2011 nî lūn-bûn

@nan

2011 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի հունվարին հրատարակված գիտական հոդված

@hy

2011年の論文

@ja

2011年論文

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2011年論文

@zh-hant

2011年論文

@zh-hk

2011年論文

@zh-mo

2011年論文

@zh-tw

2011年论文

@wuu

name

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

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type

label

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

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prefLabel

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

@ast

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

@en

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

@nl

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Nucleic Acids Research

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

@en

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Brian P Anton

http://www.w3.org/2001/XMLSchema#string

Charles Delisi

http://www.w3.org/2001/XMLSchema#string

Dennis Vitkup

http://www.w3.org/2001/XMLSchema#string

Genevieve Housman

http://www.w3.org/2001/XMLSchema#string

Han-Pil Choi

http://www.w3.org/2001/XMLSchema#string

John N Rachlin

http://www.w3.org/2001/XMLSchema#string

Jyotsna Guleria

http://www.w3.org/2001/XMLSchema#string

Kevin R Tao

http://www.w3.org/2001/XMLSchema#string

Lais Osmani

http://www.w3.org/2001/XMLSchema#string

Lina L Faller

http://www.w3.org/2001/XMLSchema#string

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Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

Improvements to services at the European Nucleotide Archive

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Identifying protein function--a call for community action

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

The Universal Protein Resource (UniProt) in 2010

HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination.

The National Center for Biotechnology Information's Protein Clusters Database.

DDBJ launches a new archive database with analytical tools for next-generation sequence data

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D11-4

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scholarly article

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10.1093/NAR/GKQ1168

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Database issue

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39

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Richard Roberts

Steven Salzberg

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2011-01-01T00:00:00Z

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49629068

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21097892

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3013729

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