Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers
about
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.COMBREX: a project to accelerate the functional annotation of prokaryotic genomesNemaPath: online exploration of KEGG-based metabolic pathways for nematodesMaGe: a microbial genome annotation system supported by synteny resultsPDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189Isofunctional Protein Subfamily Detection Using Data Integration and Spectral ClusteringGetting started in structural phylogenomicsNew metrics for comparative genomicsInsights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modelingExploring inconsistencies in genome-wide protein function annotations: a machine learning approachFUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology.Critical assessment of human metabolic pathway databases: a stepping stone for future integration.Accelerating the reconstruction of genome-scale metabolic networks.ORENZA: a web resource for studying ORphan ENZyme activitiesEstimating the annotation error rate of curated GO database sequence annotations.PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways.Automatic policing of biochemical annotations using genomic correlationsConsensus and conflict cards for metabolic pathway databases.ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-ProtA curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors.Characterising Complex Enzyme Reaction Data.Public databases and software for the pathway analysis of cancer genomes.Functional Annotations of Paralogs: A Blessing and a CurseProfiling the orphan enzymes.MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind.Empirical power laws for the radii of gyration of protein oligomers.Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure.Modeling Neisseria meningitidis metabolism: from genome to metabolic fluxes.Confronting the catalytic dark matter encoded by sequenced genomes.The MetaCyc database of metabolic pathways and enzymes.Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps.Gene network biological validity based on gene-gene interaction relevance
P2860
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P2860
Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers
description
2005 nî lūn-bûn
@nan
2005 թուականին հրատարակուած գիտական յօդուած
@hyw
2005 թվականին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@ast
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@en
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@nl
type
label
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@ast
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@en
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@nl
prefLabel
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@ast
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@en
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@nl
P2860
P3181
P356
P1476
Genome annotation errors in pa ...... mbiguity in partial EC numbers
@en
P2093
P2860
P304
P3181
P356
10.1093/NAR/GKI711
P407
P577
2005-07-20T00:00:00Z