PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
about
Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search spaceDesigning Efficient Spaced Seeds for SOLiD Read MappingFrom RNA-seq reads to differential expression resultsAlignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision MedicineStructural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectivesSeeds for effective oligonucleotide designTools for mapping high-throughput sequencing data.The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software toolsPyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.Evaluation and comparison of multiple aligners for next-generation sequencing data analysis.CRCDA--Comprehensive resources for cancer NGS data analysis.Accurate genome relative abundance estimation based on shotgun metagenomic readsAssembly algorithms for next-generation sequencing data.Ultra-deep sequencing reveals the microRNA expression pattern of the human stomach.HiTEC: accurate error correction in high-throughput sequencing data.Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States.RseqFlow: workflows for RNA-Seq data analysis.Ψ-RA: a parallel sparse index for genomic read alignmentHow do alignment programs perform on sequencing data with varying qualities and from repetitive regions?FadE: whole genome methylation analysis for multiple sequencing platformsA coverage criterion for spaced seeds and its applications to support vector machine string kernels and k-mer distancesMAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.A survey of sequence alignment algorithms for next-generation sequencing.Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae-specific gene families.ComB: SNP calling and mapping analysis for color and nucleotide space platforms.Sensitive and fast mapping of di-base encoded reads.The genetic basis of rapidly evolving male genital morphology in DrosophilaEffect of RNA integrity on uniquely mapped reads in RNA-Seq.DIDA: Distributed Indexing Dispatched Alignment.Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83.BatAlign: an incremental method for accurate alignment of sequencing readsBest hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds.Next generation sequence analysis and computational genomics using graphical pipeline workflows.Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources.Evaluation of next-generation sequencing software in mapping and assembly.Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysisNew Generations: Sequencing Machines and Their Computational Challenges.A hybrid short read mapping accelerator.WALT: fast and accurate read mapping for bisulfite sequencing.B-MIC: An Ultrafast Three-Level Parallel Sequence Aligner Using MIC.
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P2860
PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
description
2009 nî lūn-bûn
@nan
2009 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@ast
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@en
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@nl
type
label
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@ast
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@en
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@nl
prefLabel
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@ast
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@en
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@nl
P2093
P2860
P356
P1433
P1476
PerM: efficient mapping of sho ...... ic full sensitive spaced seeds
@en
P2093
Tade Souaiaia
Yangho Chen
P2860
P304
P356
10.1093/BIOINFORMATICS/BTP486
P407
P577
2009-10-01T00:00:00Z