RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays - Test2 - elhamkhani - TriplyDB

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

http://www.wikidata.org/entity/Q24655562

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Transcript length bias in RNA-seq data confounds systems biology Global analysis of the small RNA transcriptome in different ploidies and genomic combinations of a vertebrate complex--the Squalius alburnoides Isoform diversity and regulation in peripheral and central neurons revealed through RNA-Seq A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Differential expression analysis for sequence count data Microarrays, deep sequencing and the true measure of the transcriptome Comparison of next-generation sequencing systems Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations Interspecific profiling of gene expression informed by comparative genomic hybridization: A review and a novel approach in African cichlid fishes Comparative studies of gene expression and the evolution of gene regulation The landscape of long noncoding RNAs in the human transcriptome Neuroscience in the era of functional genomics and systems biology RNA-Seq: a revolutionary tool for transcriptomics Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq Integrative analysis of the melanoma transcriptome From RNA-seq reads to differential expression results RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti DBTSS: DataBase of Transcriptional Start Sites progress report in 2012 Biases in Illumina transcriptome sequencing caused by random hexamer priming Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation A scaling normalization method for differential expression analysis of RNA-seq data RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds Annotating genomes with massive-scale RNA sequencing TopHat: discovering splice junctions with RNA-Seq Aberrantly expressed microRNAs in the context of bladder tumorigenesis Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research Comprehensive Assessments of RNA-seq by the SEQC Consortium: FDA-Led Efforts Advance Precision Medicine Analysis of Whole Transcriptome Sequencing Data: Workflow and Software Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants Differential Expression Analysis for RNA-Seq: An Overview of Statistical Methods and Computational Software MECHANISMS IN ENDOCRINOLOGY: Alternative splicing: the new frontier in diabetes research The application of omics technologies in the functional evaluation of inulin and inulin-containing prebiotics dietary supplementation Cracking the Code of Human Diseases Using Next-Generation Sequencing: Applications, Challenges, and Perspectives Methods for biological data integration: perspectives and challenges

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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2008 nî lūn-bûn

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2008 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2008 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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RNA-seq: an assessment of tech ...... on with gene expression arrays

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Genome Research

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RNA-seq: an assessment of tech ...... on with gene expression arrays

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Christopher E Mason

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Matthew Stephens

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Shrikant M Mane

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P2860

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Genome sequencing in microfabricated high-density picolitre reactors

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

The transcriptional landscape of the yeast genome defined by RNA sequencing

Paired-end mapping reveals extensive structural variation in the human genome

Statistical significance for genomewide studies

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

Normalization of cDNA microarray data

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10.1101/GR.079558.108

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18

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5305832

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18550803

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reproducibility

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2527709

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