Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini - Test2 - elhamkhani - TriplyDB

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

http://www.wikidata.org/entity/Q24653446

about

Activity-based proteomics of enzyme superfamilies: serine hydrolases as a case study Metabolic regulation of protein N-alpha-acetylation by Bcl-xL promotes cell survival Protease signalling: the cutting edge Regulation of cardiac proteasomes by ubiquitination, SUMOylation, and beyond Mechanistic and Structural Understanding of Uncompetitive Inhibitors of Caspase-6 Using proteomics to uncover extracellular matrix interactions during cardiac remodeling.Phage display and structural studies reveal plasticity in substrate specificity of caspase-3a from zebrafish Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity Post-translational modifications regulate class IIa histone deacetylase (HDAC) function in health and disease Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity Substrate-driven mapping of the degradome by comparison of sequence logos Network analyses reveal pervasive functional regulation between proteases in the human protease web Characterizing Protease Specificity: How Many Substrates Do We Need?Comparative assessment of large-scale proteomic studies of apoptotic proteolysis Apoptotic DNA degradation into oligonucleosomal fragments, but not apoptotic nuclear morphology, relies on a cytosolic pool of DFF40/CAD endonuclease Structural basis of fluorescence quenching in caspase activatable-GFP.An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana.Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics Structural determinants of limited proteolysis.Polo kinase and separase regulate the mitotic licensing of centriole duplication in human cells.Cleavage of TRPM7 releases the kinase domain from the ion channel and regulates its participation in Fas-induced apoptosis.Letting go: modification of cell adhesion during apoptosis.A multi-factor model for caspase degradome prediction Cooperative effects in the substrate specificity of the complement protease C1s.Reactivity-dependent PCR: direct, solution-phase in vitro selection for bond formation.An unbiased proteomic screen reveals caspase cleavage is positively and negatively regulated by substrate phosphorylation Proteomic profiling of proteases: tools for granzyme degradomics.Pripper: prediction of caspase cleavage sites from whole proteomes Circulating proteolytic signatures of chemotherapy-induced cell death in humans discovered by N-terminal labeling.Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense Structural and kinetic determinants of protease substrates Sampling the N-terminal proteome of human blood.The Jekyll and Hyde functions of caspases.Characterization of a caspase-3-substrate kinome using an N- and C-terminally tagged protein kinase library produced by a cell-free system Inflammatory stimuli regulate caspase substrate profiles.A statistics-based platform for quantitative N-terminome analysis and identification of protease cleavage products Myristoylation: An Important Protein Modification in the Immune Response LabCaS: labeling calpain substrate cleavage sites from amino acid sequence using conditional random fields.Prediction of protease substrates using sequence and structure features.Chemoenzymatic labeling of protein C-termini for positive selection of C-terminal peptides.

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P2860

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

http://www.wikidata.org/entity/Q24653446

description

2008 nî lūn-bûn

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2008 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2008 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2008年論文

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2008年論文

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Global sequencing of proteolyt ...... labeling of protein N termini

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Global sequencing of proteolyt ...... labeling of protein N termini

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Global sequencing of proteolyt ...... labeling of protein N termini

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Global sequencing of proteolyt ...... labeling of protein N termini

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Global sequencing of proteolyt ...... labeling of protein N termini

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Alma L Burlingame

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David T Barkan

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James A Wells

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Jonathan C Trinidad

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Sami Mahrus

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P2860

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

Cytoscape: a software environment for integrated models of biomolecular interaction networks

Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8

Sharp, an inducible cofactor that integrates nuclear receptor repression and activation

Profiling constitutive proteolytic events in vivo

MINT: the Molecular INTeraction database

Human protein reference database--2006 update

Pfam: clans, web tools and services

MODBASE: a database of annotated comparative protein structure models and associated resources.

Profile hidden Markov models

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18722006

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apoptotic process

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