PatternLab for proteomics: a tool for differential shotgun proteomics - Test2 - elhamkhani - TriplyDB

PatternLab for proteomics: a tool for differential shotgun proteomics

PatternLab for proteomics: a tool for differential shotgun proteomics

http://www.wikidata.org/entity/Q24653597

about

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant equisetum hyemale Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose Chemo-resistant protein expression pattern of glioblastoma cells (A172) to perillyl alcohol.From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics.Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.Microproteomic analysis of 10,000 laser captured microdissected breast tumor cells using short-range sodium dodecyl sulfate-polyacrylamide gel electrophoresis and porous layer open tubular liquid chromatography tandem mass spectrometry.GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.XDIA: improving on the label-free data-independent analysis Secretome of the biocontrol agent metarhizium anisopliae induced by the cuticle of the cotton pest Dysdercus peruvianus reveals new insights into infection Analyzing shotgun proteomic data with PatternLab for proteomics.Dynamic proteomic overview of glioblastoma cells (A172) exposed to perillyl alcohol.Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis A bayesian mixture model for comparative spectral count data in shotgun proteomics.Plasma membrane proteomics of human breast cancer cell lines identifies potential targets for breast cancer diagnosis and treatment.eulerAPE: drawing area-proportional 3-Venn diagrams using ellipses.Improvements in proteomic metrics of low abundance proteins through proteome equalization using ProteoMiner prior to MudPIT.Reproducible cancer biomarker discovery in SELDI-TOF MS using different pre-processing algorithms.Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.Proteome analysis of the surface of Trichomonas vaginalis reveals novel proteins and strain-dependent differential expression.Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.Microbiology and proteomics, getting the best of both worlds!The influence of iron on the proteomic profile of Chromobacterium violaceum.Integration of shot-gun proteomics and bioinformatics analysis to explore plant hormone responses Analyzing marginal cases in differential shotgun proteomics.Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods.A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement.YADA: a tool for taking the most out of high-resolution spectra.Ecto-Fc MS identifies ligand-receptor interactions through extracellular domain Fc fusion protein baits and shotgun proteomic analysis.Mechanisms of acute kidney injury induced by experimental Lonomia obliqua envenomation.Salt Stress Induced Changes in the Exoproteome of the Halotolerant Bacterium Tistlia consotensis Deciphered by Proteogenomics.Identifying components of protein complexes in C. elegans using co-immunoprecipitation and mass spectrometry.Search engine processor: Filtering and organizing peptide spectrum matches.Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach Candidate hippocampal biomarkers of susceptibility and resilience to stress in a rat model of depression.Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus.Proteomic response of methicillin-resistant S. aureus to a synergistic antibacterial drug combination: a novel erythromycin derivative and oxacillin.

P2860

Q22065288-2477AA9C-BAEE-4DF5-B0C1-04ECF7AFA8B7 Q24632639-809F929F-016A-4AA7-A77E-9535F2D53CB1 Q28727999-477D6532-8ADC-42EC-8EB9-8656032BF6BF Q28742955-83585165-DF2C-407D-928C-9CD3498B7448 Q30497846-73E51DC6-4956-45FB-ACD2-C5B48060D1BC Q30957297-F300365F-32D5-45E3-BAA0-4BE46D73704E Q31031694-C411A6F8-3549-4006-9D63-DFCC6ACCA342 Q31031915-C0069C71-CF94-4301-AB17-75697EC31C21 Q33412007-54D4A9C4-08BD-48A5-9459-38C820ED9232 Q33526933-745DFDD7-01BD-4CDD-997C-0C234AFDB6B8 Q33577332-E7192022-A0BD-4936-A6C1-34DCFCBA3DC3 Q33593312-A899105B-B9E2-4A78-A128-19C31D6090C1 Q33712312-56DEB0E7-4412-477D-B24E-BB4FF6F3D1D7 Q33832543-67CB2FFC-7ECA-49AB-B030-B8BA4198A737 Q33908094-2F399383-60C0-4050-827F-D31A4C102BC9 Q33910532-D084AA97-68E3-41FA-9266-6C324F994E5A Q33916258-392D9ADA-CFD0-4479-849A-28D617CE1B44 Q33942198-49FF638A-7998-4DEB-AD3E-8C416E845102 Q34056239-6BD68571-3F75-4AF9-B505-179CA4D56F13 Q34084862-07DE70EB-A167-45EF-B9A6-475B86D3149B Q34122080-11A030EC-8781-485E-82D4-7D2A3AAC5AC2 Q34122101-F5CB9297-BBC6-435D-B475-0883B83EB1CC Q34172638-7608EE5D-6051-432B-BC19-BDB13065CF8B Q34307889-D51680B0-721F-4335-B5C3-7A06FFCC5581 Q34436307-CF939C60-AD63-4277-BC28-D9F6BDD786BB Q34436633-48083B00-0690-439C-A574-7B2247F996FD Q34480111-A6DE5D88-7E31-47C1-BA85-0EB8ED5022F9 Q34635017-F16F0431-F645-4986-A8A9-80277B52F0E7 Q35093202-CC0B9C69-BA1E-4B7B-A2C8-2D283ABF045C Q35119624-A7A21081-A9C0-40BA-AF62-24CFDD36737A Q35256020-91161F0D-BDB1-4600-A6C5-C8333357ACFA Q35457886-F1B8F65F-3AA4-430A-B2F7-AB437E0B99F1 Q35750122-7EC34827-6B59-4D60-99ED-6C17495558CE Q35756131-A70B71BD-30E7-4006-A9B3-38871A724EE7 Q35907281-7424F90F-6EA0-46FD-86C5-21595CC075C1 Q35960793-EEC85F56-933C-473F-998D-D03FCE0E7F7F Q36089877-4E4D03AB-76D5-4E59-ABD3-B8274595E14F Q36128911-DE489391-A3B9-4CB4-ABAC-C45924D39982 Q36209065-83526DEF-3174-4D8C-8AE7-D294ECB669D9 Q36500457-64A92105-CC59-4F73-BCE7-221517DFDE55

P2860

PatternLab for proteomics: a tool for differential shotgun proteomics

http://www.wikidata.org/entity/Q24653597

description

2008 nî lūn-bûn

@nan

2008 թուականին հրատարակուած գիտական յօդուած

@hyw

2008 թվականին հրատարակված գիտական հոդված

@hy

2008年の論文

@ja

2008年論文

@yue

2008年論文

@zh-hant

2008年論文

@zh-hk

2008年論文

@zh-mo

2008年論文

@zh-tw

2008年论文

@wuu

name

PatternLab for proteomics: a tool for differential shotgun proteomics

@ast

PatternLab for proteomics: a tool for differential shotgun proteomics

@en

PatternLab for proteomics: a tool for differential shotgun proteomics

@nl

type

label

PatternLab for proteomics: a tool for differential shotgun proteomics

@ast

PatternLab for proteomics: a tool for differential shotgun proteomics

@en

PatternLab for proteomics: a tool for differential shotgun proteomics

@nl

prefLabel

PatternLab for proteomics: a tool for differential shotgun proteomics

@ast

PatternLab for proteomics: a tool for differential shotgun proteomics

@en

PatternLab for proteomics: a tool for differential shotgun proteomics

@nl

P1433

Q24653597-D098126E-B53D-4E2A-B4CA-7511D0BE3EBD

P1476

Q24653597-9A9669F8-BA66-4300-A6B2-4983A2F0B7D7

P2093

Q24653597-559E6EB5-6096-4408-8968-9C809F6D5905

Q24653597-8AA4A4DB-A369-4D49-BDD0-14D3E6527487

Q24653597-AED7BD8E-9AA7-4CB2-89A2-AD7E09F89B83

Q24653597-F1673480-0275-4A8B-9E90-ED48E3CE9F7E

P2860

Q24653597-18CF7859-48E3-4F2F-88A8-14C26BE66134

Q24653597-1C8A4A18-0560-41A8-A2DF-F821461B4C9C

Q24653597-2423CA5F-0C91-4C82-B1EB-F4FFDF2C3980

Q24653597-30E22B7F-BC98-448E-94B5-211477039D5B

Q24653597-475C7B91-77CD-48A1-8FE1-0A3DFD8C528F

Q24653597-548D9D43-64E7-4900-908C-36C3A2F431ED

Q24653597-6D6B29DF-8F3E-4410-9BA1-ABCC53660E5F

Q24653597-6F08148D-FA68-4087-8991-B57233EB1A86

Q24653597-82DFA8F8-7ACE-49C6-9142-F7928CD818F6

Q24653597-980B947F-3EDB-4A6F-BE1D-8A2B750E7D38

P2888

Q24653597-AF9C6FD8-1994-445E-805B-B49ABE8CDE4E

P304

Q24653597-68D2775B-479E-4F2B-BE78-D1998E508415

P31

Q24653597-88E439B5-D1F4-48B5-9C1F-25C7C211EA73

P356

Q24653597-1705C94B-4223-47B9-A6CA-A90113B265F2

P407

Q24653597-A8D8EBFE-2021-472D-8BCE-01D4713B87C3

P433

Q24653597-120C95DB-E04A-488E-8089-A2D50C15710A

P478

Q24653597-DD8520AD-7635-4602-9BB9-2FD4FA429050

P50

Q24653597-6BB0EC30-C2A4-402F-A57D-A47344ED404C

P577

Q24653597-5D233353-587D-4FB7-8FE3-E746CACC6AC2

P5875

Q24653597-E331FAD5-A98F-4E89-9A02-DF9BE0B205C1

P6179

Q24653597-A299B103-378F-49CD-8A51-768E7B82EDC1

P698

Q24653597-73B5983A-27BE-48E1-AFF1-D3462ECC5DA4

P932

Q24653597-95B8B78B-037B-4101-996A-8256EFAF7416

P356

1471-2105-9-316

P1433

BMC Bioinformatics

P1476

PatternLab for proteomics: a tool for differential shotgun proteomics

@en

P2093

Emily I Chen

http://www.w3.org/2001/XMLSchema#string

John R Yates

http://www.w3.org/2001/XMLSchema#string

Juliana S G Fischer

http://www.w3.org/2001/XMLSchema#string

Paulo C Carvalho

http://www.w3.org/2001/XMLSchema#string

P2860

Determination of the differentially expressed genes in microarray experiments using local FDR

Processing methods for differential analysis of LC/MS profile data

Probability-based protein identification by searching sequence databases using mass spectrometry data

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

Detecting differential and correlated protein expression in label-free shotgun proteomics

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

The significance of digital gene expression profiles

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

A proteomic view of the Plasmodium falciparum life cycle

P2888

1471-2105-9-316

P304

316

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1186/1471-2105-9-316

http://www.w3.org/2001/XMLSchema#string

P407

P433

1

http://www.w3.org/2001/XMLSchema#string

P478

9

http://www.w3.org/2001/XMLSchema#string

P50

Valmir C Barbosa

P577

2008-01-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

51418114

http://www.w3.org/2001/XMLSchema#string

P6179

1053085389

http://www.w3.org/2001/XMLSchema#string

P698

18644148

http://www.w3.org/2001/XMLSchema#string

P932

2488363

http://www.w3.org/2001/XMLSchema#string